PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16905.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 321aa    MW: 34556.1 Da    PI: 8.4673
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16905.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-203686256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             ++ GVr+++ +grWvAeI+d s   +r r +lg+++t+eeAa+a+++a+++l+ge
  mrna16905.1-v1.0-hybrid 36 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 86
                             589******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.5343693IPR001471AP2/ERF domain
SMARTSM003801.6E-343699IPR001471AP2/ERF domain
CDDcd000181.47E-313694No hitNo description
Gene3DG3DSA:3.30.730.103.9E-283693IPR001471AP2/ERF domain
PfamPF008474.1E-153686IPR001471AP2/ERF domain
PRINTSPR003673.3E-73748IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-203793IPR016177DNA-binding domain
PRINTSPR003673.3E-75975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAGPELSKTT MASATTTATK AMSKSSTSSA KAALRRFVGV RQRPSGRWVA EIKDSSQRVR  60
LWLGTYDTPE EAARAYDEAA RALRGENART NFAAPAGNPD SNSSLLANSC PNPNGTFMPS  120
GLSDGRHGGG QGLSFSSLKA KLSKNLQSIM ARSSDHHNKS SKSRVSDHFT FASIFHFRKY  180
QQYQNNPVNP LFDMKNIEKV VQPSIIVPHA AETSTLIVPH AGETSTSTST EPSSWESSSI  240
SDCSDWGYSF RQRGMDSDGS DLGDGFMDQI MGWMDSPDQM SSASVTVGDD CEEGSRSKRF  300
KVSSSVMVPS TFAGSPYNNN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1436921471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16905.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297883.10.0PREDICTED: uncharacterized protein LOC101294553
TrEMBLA0A3Q8TCZ60.0A0A3Q8TCZ6_FRAAN; Transcription factor ERF44
STRINGXP_004297883.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83243143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-16related to AP2 11