PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna17030.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 242aa MW: 27814.6 Da PI: 6.1695

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna17030.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42.1	2.9e-13	72	200	1	90
FAR1 1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk....................................t 48 kfY YA vGFs r k+ k ++ + + +r ++Csk+g++++ kk mrna17030.1-v1.0-hybrid 72 KFYAYYAFVVGFSRRCFKHDKAviNDVECVRRRAWCCSKQGYEDSAAKKkrkkvyetdklvteeaanekeeecedatalnkkkkkM 157 6************9999999766667789999*****999888899**********************97654433 PP FAR1 49 ekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +++ r + +rtgC+a ++v++++ + ++ev +++ +HnHe+a mrna17030.1-v1.0-hybrid 158 KTALRGIKYSRTGCEAVFQVRLNRrTMEYEVVSFVPDHNHEVA 200 3333466789*********999************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.5E-11	72	200	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MEDPVILIEE QEVGRDKSDE HGNSKSVGAD DITDETVFSS EWYAALKGKN MKLLRFEDVK 60 DIIFSSLAEA DKFYAYYAFV VGFSRRCFKH DKAVINDVEC VRRRAWCCSK QGYEDSAAKK 120 KRKKVYETDK LVTEEAANEK EEECEDATAL NKKKKKMKTA LRGIKYSRTG CEAVFQVRLN 180 RRTMEYEVVS FVPDHNHEVA EPYERQFLRS CREVTMDNVC VVLSLQMAQV PTSVAYEFMA 240 L*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	123	RRRAWCCSKQGYEDSAAKKKRKK
2	119	123	KKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna17030.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004292007.1	1e-152	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_004292007.1	1e-152	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF25686	2	3

Link Out ? help Back to Top
Phytozome	mrna17030.1-v1.0-hybrid