PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna17500.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 202aa MW: 23378.7 Da PI: 10.0097

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna17500.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	95.2	7.7e-30	36	123	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+++ k+ +++r++ra tr gCka+++vk+ek+gkw vt++ +eHnH mrna17500.1-v1.0-hybrid 36 FYDAYATHMGFIMRVDAFRRSLRDGKVVWRRLVCNKEGFRKTRPKR-SESRKPRAITREGCKAMIVVKREKSGKWIVTRFIKEHNH 120 9*****************************************99.9************************************ PP FAR1 88 ela 90 +l+ mrna17500.1-v1.0-hybrid 121 SLV 123 996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-28	36	123	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MIESSNGQEA AAFEGSSDME PYVGMEFETE EAAKVFYDAY ATHMGFIMRV DAFRRSLRDG 60 KVVWRRLVCN KEGFRKTRPK RSESRKPRAI TREGCKAMIV VKREKSGKWI VTRFIKEHNH 120 SLVVTPANGR RTVLLSQTPD EKDMKIRELT AELQRERKRS AAYQEQLDMV LREMEEHSNH 180 LSRNIDDIVQ SVKEIESKRV A*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna17500.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004290121.1	1e-148	PREDICTED: protein FAR1-RELATED SEQUENCE 7
Swissprot	Q9SZL8	2e-30	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2P6PTS1	1e-141	A0A2P6PTS1_ROSCH; Putative transcription factor FAR family
STRING	XP_004290121.1	1e-148	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-96	FAR1 family protein

Link Out ? help Back to Top
Phytozome	mrna17500.1-v1.0-hybrid

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]