PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17698.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 453aa    MW: 51223.9 Da    PI: 6.1147
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17698.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-19220270256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  mrna17698.1-v1.0-hybrid 220 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 270
                              59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.65E-34219279No hitNo description
SuperFamilySSF541717.19E-23220278IPR016177DNA-binding domain
SMARTSM003801.5E-40220283IPR001471AP2/ERF domain
PROSITE profilePS5103222.998220277IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-32220278IPR001471AP2/ERF domain
PRINTSPR003678.0E-11221232IPR001471AP2/ERF domain
PfamPF008472.7E-12221270IPR001471AP2/ERF domain
PRINTSPR003678.0E-11243259IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MAAAKRSGES NFETQMETSK DCDLDKGKEH DFLLEGHQWK PVFDEAPVSN RPLKKIKSPE  60
RSHQHRSSAF SPEFQIPSPP PPPRSSSDTS TITSCCPLSS RIVFPFAFDG SLPQQQQQQP  120
IQFPRQFHST GLQPNQFPPN THVVEQQQQQ NQQQMISFAS QQQHMISWQQ HQQQQMLQYW  180
SDALNLSPRG RMMMMMNRFG GANSSGGIRP PAMPISTSKL YRGVRQRHWG KWVAEIRLPR  240
NRTRLWLGTF DTAEDAAMAY DREAFKLRGE NARLNFPELF LNKEKHNDNA AAVSAAAPIQ  300
QVSKPLRSQG MQQLKNLDLQ LQVPISDNET VAPPPAPYAQ PQEDDDTSHQ LEVENHGERG  360
GIMSDAPTQE MVWGEMAEAW LNAIPQGWGP GSPVWDDLEL DMTSNNLVLP SHDHNGFTAN  420
NSNRHDFPQQ DDNSCSASSS YPMQPFFWKD QD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-21219277160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-20216277163ATERF1
3gcc_A1e-20216277163ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17698.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6698222e-72JQ669822.1 Malus x domestica dehydration-responsive element-binding protein (DREB6) (DREB6-1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011466891.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLA0A3S8T8Z70.0A0A3S8T8Z7_FRAAN; Transcription factor ERF1
STRINGXP_004305415.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-53ERF family protein