PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna17720.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 580aa MW: 64470.2 Da PI: 5.207

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna17720.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	81.7	1.5e-25	4	140	1	128
NAM 1 lppGfrFhPtdeelvveyL..kkkvegkk..leleevikevdiy.kvePwdLpk...kvkaeekewyfFskrdkkyatgkrknrat 78 +p+GfrFhPtdeel+ +yL k+kv + + e++ v++evd+y ++ePw++ + ++ +++++fF+k +k +++g+r nr++ mrna17720.1-v1.0-hybrid 4 VPVGFRFHPTDEELIRHYLylKNKVIKGPaeEEAAAVVPEVDLYgETEPWRIWEahgGADLYDQDLFFFTKLKKVNPHGTRINRKI 89 599***********986225666666644344456*99568*74233333366799**************** PP NAM 79 ksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+W++ ++++++ +++ +g k+ + + + +++ ++ W m+ey+l mrna17720.1-v1.0-hybrid 90 GTGTWSEGEPSRPIFVGekkNKTPIGRKRKFRYEN--KSSDHHGCWYMEEYSL 140 ***********975445555****984..4444699*****98 PP
2	NAM	27.6	8e-09	186	212	2	28
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkl 28 p+GfrFhPtd+el++++L +k +gk mrna17720.1-v1.0-hybrid 186 PVGFRFHPTDQELICYFLYNKNKGKGG 212 89********************99973 PP
3	NAM	38.5	3.5e-12	323	432	22	128
NAM 22 kvegkkleleevikevdiy.kvePwdLpk...kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk.kgelvg 101 +ve k +++ +++e+d++ ++ePw++ + ++ +++++fF++ +k +++g+r r + + g+W++ +k++++ +g+ +g mrna17720.1-v1.0-hybrid 323 EVEVGK-KENMFLHEFDLFgSTEPWEIWEmfrGAELCNQDLFFFTQLKKVNPKGSRIGRkVGSGGTWSEGDVSKPIVDDrTGNPIG 407 333333.232469999987367***75233333355689**************5556899*******9868889 PP NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 k+ L + k +p+ ++ W ++ey+l mrna17720.1-v1.0-hybrid 408 RKRKLRYEKVGSPH--HACWYLDEYSL 432 *****9877777..8******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-27	2	154	IPR003441	NAC domain
PROSITE profile	PS51005	29.157	4	156	IPR003441	NAC domain
Pfam	PF02365	1.2E-16	5	140	IPR003441	NAC domain
SuperFamily	SSF101941	2.22E-7	184	210	IPR003441	NAC domain
Pfam	PF02365	9.2E-12	186	432	IPR003441	NAC domain
PROSITE profile	PS51005	18.696	302	448	IPR003441	NAC domain
SuperFamily	SSF101941	4.32E-14	333	447	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence Send to blast
MANVPVGFRF HPTDEELIRH YLYLKNKVIK GPAEEEAAAV VPEVDLYGET EPWRIWEAHG 60 GADLYDQDLF FFTKLKKVNP HGTRINRKIG TGTWSEGEPS RPIFVGEKKN KTPIGRKRKF 120 RYENKSSDHH GCWYMEEYSL DGIKSADYVI CRLRENNRSG GGGTGGNRDS LAISVAASME 180 ASGPIPVGFR FHPTDQELIC YFLYNKNKGK GGRGLAMFMA EEAEAEAEEE KIKALPAAEG 240 QAELPEDKNN TNEKEGQAPP PEVEEKKNNG ENEAAAVVPV EEEEKKKDKG KEKKTEGEMQ 300 AAPLLLLEYM KDNQEDETLL PREVEVGKKE NMFLHEFDLF GSTEPWEIWE MFRGAELCNQ 360 DLFFFTQLKK VNPKGSRIGR KVGSGGTWSE GDVSKPIVDD RTGNPIGRKR KLRYEKVGSP 420 HHACWYLDEY SLLDADIGDY VICRLRKNDK LAAAAFSSAE AVNNRKRKAT PSTTPATAEE 480 SKQPPTAAEE SKQPPATAEE SQALALATAE ESKQPPATAE ESKQEEDSSK AKRRRITGLT 540 QVEEAAADVL MNMANSTLNH NTLKLFGIEI GSTPIIGGE*

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence Send to blast

MANVPVGFRF HPTDEELIRH YLYLKNKVIK GPAEEEAAAV VPEVDLYGET EPWRIWEAHG  60
GADLYDQDLF FFTKLKKVNP HGTRINRKIG TGTWSEGEPS RPIFVGEKKN KTPIGRKRKF  120
RYENKSSDHH GCWYMEEYSL DGIKSADYVI CRLRENNRSG GGGTGGNRDS LAISVAASME  180
ASGPIPVGFR FHPTDQELIC YFLYNKNKGK GGRGLAMFMA EEAEAEAEEE KIKALPAAEG  240
QAELPEDKNN TNEKEGQAPP PEVEEKKNNG ENEAAAVVPV EEEEKKKDKG KEKKTEGEMQ  300
AAPLLLLEYM KDNQEDETLL PREVEVGKKE NMFLHEFDLF GSTEPWEIWE MFRGAELCNQ  360
DLFFFTQLKK VNPKGSRIGR KVGSGGTWSE GDVSKPIVDD RTGNPIGRKR KLRYEKVGSP  420
HHACWYLDEY SLLDADIGDY VICRLRKNDK LAAAAFSSAE AVNNRKRKAT PSTTPATAEE  480
SKQPPTAAEE SKQPPATAEE SQALALATAE ESKQPPATAE ESKQEEDSSK AKRRRITGLT  540
QVEEAAADVL MNMANSTLNH NTLKLFGIEI GSTPIIGGE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-13	3	153	14	165	Stress-induced transcription factor NAC1

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	531	535	KRRRI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna17720.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011466904.1	0.0	PREDICTED: uncharacterized protein LOC105352211
TrEMBL	A0A2P6RTY0	0.0	A0A2P6RTY0_ROSCH; Putative transcription factor NAM family
STRING	XP_004309935.1	7e-46	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF34264	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24590.2	2e-15	TCV-interacting protein

Link Out ? help Back to Top
Phytozome	mrna17720.1-v1.0-hybrid