PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17721.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 417aa    MW: 48614.1 Da    PI: 9.6057
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17721.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.62.6e-1961453128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkk.........leleevikevdiy.kvePwdLpkkvka...eekewyfFskrdkkyatgkrkn 75 
                              +GfrF Ptdeel++++L +k + ++         ++ +++++evd+y +vePw++ +++ +    ++++ fF++++  ++ g r +
  mrna17721.1-v1.0-hybrid   6 VGFRFYPTDEELISYFLDNKNNVHTtaqvpsmatFNYNNIMPEVDLYgDVEPWQIWETYGGselYDQDMLFFTQHKMVNPDGLRIQ 91 
                              7*******************88888778877766666668*****99457*****743322222556889**************** PP

                      NAM  76 r.atksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              r + + g+W++    k ++++   ++ +g k+ + + k+   + ++  W ++ey+l
  mrna17721.1-v1.0-hybrid  92 RkVGSGGTWSEGEPGKLIFDSklMQKPIGQKRKFRYEKK--GSEHNGCWYLEEYSL 145
                              *5556889**99999999988777788********9843..3335889******87 PP
2NAM75.51.2e-231833152128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiy.kvePwdLpk...kvkaeekewyfFskrdkkyatgkrknr.atks 80 
                              p+GfrFhPtd++l++++L+kkv+++    + ++++ e+d++ ++ePw++ +    ++ ++++++fF+k ++++ +++r  r + +s
  mrna17721.1-v1.0-hybrid 183 PVGFRFHPTDQQLISYFLHKKVTEEAslYSYKNIVCEFDLFgSTEPWEIWNmygGHELRNQDLFFFTKLKRASLKSSRILRkIGSS 268
                              89********************9999876777789999987367*****74233333366689****************9955669 PP

                      NAM  81 gyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g+W++t  +k ++++ k++++g ++ L +   ++ + ++ +W ++ey+l
  mrna17721.1-v1.0-hybrid 269 GTWSETDASKLIKDEaKQKHIGRRRKLRYE--SKCSKQHGHWYLDEYSL 315
                              *************9877788********98..44444689*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.1164161IPR003441NAC domain
SuperFamilySSF1019411.1E-195159IPR003441NAC domain
PfamPF023651.4E-126145IPR003441NAC domain
SuperFamilySSF1019414.71E-25179329IPR003441NAC domain
PROSITE profilePS5100528.689182330IPR003441NAC domain
PfamPF023653.8E-16183315IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MSSDLVGFRF YPTDEELISY FLDNKNNVHT TAQVPSMATF NYNNIMPEVD LYGDVEPWQI  60
WETYGGSELY DQDMLFFTQH KMVNPDGLRI QRKVGSGGTW SEGEPGKLIF DSKLMQKPIG  120
QKRKFRYEKK GSEHNGCWYL EEYSLLSMNS ASYVLCRLRQ NIRKGRKRKE ISLRQESPMN  180
YAPVGFRFHP TDQQLISYFL HKKVTEEASL YSYKNIVCEF DLFGSTEPWE IWNMYGGHEL  240
RNQDLFFFTK LKRASLKSSR ILRKIGSSGT WSETDASKLI KDEAKQKHIG RRRKLRYESK  300
CSKQHGHWYL DEYSLLDSES DYVICRLRKN DKSSPPSSEW NGNKRTYSAL CQESKETLSS  360
VTNKKLLRKQ SNETMNVNNK KNNTLSDQTI AQTKRMQPGT KIKLFGVEID SDLKYV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162169RKGRKRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17721.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011466903.10.0PREDICTED: uncharacterized protein LOC105352209
TrEMBLA0A2P6RTY01e-60A0A2P6RTY0_ROSCH; Putative transcription factor NAM family
STRINGXP_008221120.19e-47(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12591634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33280.11e-14NAC domain containing protein 15