PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17724.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 219aa    MW: 24451.5 Da    PI: 6.3957
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17724.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM22.43.4e-07952142
                      NAM  1 lppGfrFhPtdeelvveyLkkk.vegkkleleev.ikevdiykv 42
                             lp+G+rF P+++el+ +yL +k v+g +l+++ + + e+d+y  
  mrna17724.1-v1.0-hybrid  9 LPVGYRFAPNEQELLLCYLYNKqVNGARLPCNMHvLMECDLYGE 52
                             799****************9985677776654333999999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-8651IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
METGRDPGLP VGYRFAPNEQ ELLLCYLYNK QVNGARLPCN MHVLMECDLY GEEEEWKQAS  60
SYIEDDIVRI CYMEEAEREA YPSIIMHDHH SVTDGLDERN ERKIIGCGRP HHFTVRISVR  120
STPYGAARGR ASTPADSSSF PDHFPSPTSP PNSSFPARST FFEVLGDLAG KLEKNGLAGD  180
GKWSGKLLEF VGVEARPRTA PYGGEWTKIR TVKRCGRP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210214TVKRC
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17724.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-