PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna17756.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

HB-other

Protein Properties

Length: 1696aa MW: 191567 Da PI: 6.2253

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna17756.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.5	2.3e-18	20	76	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r kR t++qle+Le++++ ++yps++ r+eL++kl+L++rq ++WF+ rR k++k mrna17756.1-v1.0-hybrid 20 RTKRKMKTRSQLEALEKAYAVEQYPSESVRAELSAKLDLSDRQLQMWFCHRRLKDRK 76 689****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.1E-18	5	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.2E-15	14	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.568	17	77	IPR001356	Homeobox domain
SMART	SM00389	1.6E-16	19	81	IPR001356	Homeobox domain
CDD	cd00086	1.26E-13	20	77	No hit	No description
Pfam	PF00046	4.5E-16	20	76	IPR001356	Homeobox domain
Pfam	PF05066	3.6E-15	655	723	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	4.0E-8	872	913	IPR028942	WHIM1 domain
Pfam	PF15613	6.0E-11	1054	1130	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1696 aa Download sequence Send to blast
METGSEGEKT RAQAQAQEIR TKRKMKTRSQ LEALEKAYAV EQYPSESVRA ELSAKLDLSD 60 RQLQMWFCHR RLKDRKPTPA TGKRQRNDSL AEATGVVSEE GLQQSIIEAR AVAFVEAQLG 120 EPLREDGPIL GLEFDSLPPD AFGSSIGVAT VRQQKQSGWP CDANIHEQSN AKPIKGASRT 180 VHEYQFLPEK PTVRTDAYER AAPSHHYGSP TESRHPRIPL STVSSFIHGN EQVPTVYGFQ 240 SPMVGLNLLS QQGRAGHLLP SAAEEYGNVL GKNFTNVTMD SHFSTHLINQ LNNPLIPYAR 300 RVAHDEDDVL QLERKHKSEE ARIMREVEAH EKRIRKELEK QDILRRKREE QIRKEMERID 360 RERRKEEERI LREKQREEER YLREQRRELE RKERFLQKES IRAEKMRQKE ELRREKEAAR 420 LKAANERASA RKNAKESTEL IEDECLELME LAALSKGLPS MLSLDYETLQ NLESFRDMLS 480 TFPPKSVQLK KPFGIQPWMD SDENIGNLLM DSRLLGEIHI SLLRSIIKDI EDVARAPSMG 540 VGANQNCAAN PGGGHPQIVE GAYAWGFDIK SWKCNLNPLT WPEILRQFAV SAGFGPQLKK 600 RGVELAYRHE DNEVSDVKDI ISNLRSGVAV KNAFAIMQER GFSNPRKSRH RLTPGTVKFA 660 AFHVLSLEGS KGLTILEVAD RIQKSGLRDL TTSKTPEASI AAALSRDSKL FERTAPSTYC 720 VRAAYRKDTT DSKAVLSAAR ERIQNFRSKI FDVEGADEAE RDEESESDAV EDPEVDDLGT 780 EISSEIVAHR SEVAKKVGEK MSLESRKGRY EVNKAPGDVR NVTEGVPSIN SEAFIKVEDT 840 GSLNNSADAT GICTNVANHD QEDTEIDDSN PGEPWVQGLT EGEYSDLSVE ERLNALSALI 900 GVAIEGNSIR IVLEERLEAA NALKKQMWAV VQVDKRRFKD EHFIKMQYTP FSGNKTEQIP 960 TIHSSDERQS PSTVDEKNIE RTVKLSIPQD HIVDPQNEQN YINSFPSVGN LQMQENSVGP 1020 DNYPFQQPSL IADKSHKHLK YYIGHKAEEM YVYRSLPLGQ DRRHNRYWQF ITSASRNDPG 1080 CGRIFVELHD GRWRLIDSEE SGLWMQGFDG LLASLDVRGY RESHLQAMLQ MTEIFFKETV 1140 RRNMLHSNRR RHVKDTSKIE AVEMPSGYDC SGGTDSPTSS VSVADFDMLE SSMTFSIELG 1200 KDETEKTGAL NRYHDLEKWI WKECIGSSIL SADKNGKKRC PQLLDICNSC RGIFYFEENH 1260 CHSCHRTFGK GEVVFSQHVA LCKEKLNSNC SASSPLRMRL LKVLFALTEV YVPLEALQPL 1320 WTDMNRNSWG RKLHSSSSAE ELLQVLASLE SAIKTEYLSS NFETTSELLY CSNEKGCVTS 1380 NFSSPHRVSV LPWIPLTTAA VALRLMEFDA AISNMLQQKL ESHREKESGH FIKLPTRSAV 1440 MKSSQNKEKS GAPHQSEEFK EGQQEYLRSG LASPCHGLGC GQTRSGRVPK KAISLRGDPR 1500 KKSRVTSKDR LGQVHVLKWK GKPRAQGGRK RGNRSIRGNQ PTLNRIIQIG GERNSPKECV 1560 FYKPAENLGE ENWNEGETAA ENASGSGRTE YEEENGDASR DEFDHVNVDD YGRGFNGKSD 1620 DLLEGGDYNV EGYQDDVNED YDEGEAAQDT KGDPDYDGAR YINDEWDEEE CIADDGHQNR 1680 ILRNRNRSSS SDYSD*

Sequence ? help Back to Top

Protein Sequence Length: 1696 aa Download sequence Send to blast

METGSEGEKT RAQAQAQEIR TKRKMKTRSQ LEALEKAYAV EQYPSESVRA ELSAKLDLSD  60
RQLQMWFCHR RLKDRKPTPA TGKRQRNDSL AEATGVVSEE GLQQSIIEAR AVAFVEAQLG  120
EPLREDGPIL GLEFDSLPPD AFGSSIGVAT VRQQKQSGWP CDANIHEQSN AKPIKGASRT  180
VHEYQFLPEK PTVRTDAYER AAPSHHYGSP TESRHPRIPL STVSSFIHGN EQVPTVYGFQ  240
SPMVGLNLLS QQGRAGHLLP SAAEEYGNVL GKNFTNVTMD SHFSTHLINQ LNNPLIPYAR  300
RVAHDEDDVL QLERKHKSEE ARIMREVEAH EKRIRKELEK QDILRRKREE QIRKEMERID  360
RERRKEEERI LREKQREEER YLREQRRELE RKERFLQKES IRAEKMRQKE ELRREKEAAR  420
LKAANERASA RKNAKESTEL IEDECLELME LAALSKGLPS MLSLDYETLQ NLESFRDMLS  480
TFPPKSVQLK KPFGIQPWMD SDENIGNLLM DSRLLGEIHI SLLRSIIKDI EDVARAPSMG  540
VGANQNCAAN PGGGHPQIVE GAYAWGFDIK SWKCNLNPLT WPEILRQFAV SAGFGPQLKK  600
RGVELAYRHE DNEVSDVKDI ISNLRSGVAV KNAFAIMQER GFSNPRKSRH RLTPGTVKFA  660
AFHVLSLEGS KGLTILEVAD RIQKSGLRDL TTSKTPEASI AAALSRDSKL FERTAPSTYC  720
VRAAYRKDTT DSKAVLSAAR ERIQNFRSKI FDVEGADEAE RDEESESDAV EDPEVDDLGT  780
EISSEIVAHR SEVAKKVGEK MSLESRKGRY EVNKAPGDVR NVTEGVPSIN SEAFIKVEDT  840
GSLNNSADAT GICTNVANHD QEDTEIDDSN PGEPWVQGLT EGEYSDLSVE ERLNALSALI  900
GVAIEGNSIR IVLEERLEAA NALKKQMWAV VQVDKRRFKD EHFIKMQYTP FSGNKTEQIP  960
TIHSSDERQS PSTVDEKNIE RTVKLSIPQD HIVDPQNEQN YINSFPSVGN LQMQENSVGP  1020
DNYPFQQPSL IADKSHKHLK YYIGHKAEEM YVYRSLPLGQ DRRHNRYWQF ITSASRNDPG  1080
CGRIFVELHD GRWRLIDSEE SGLWMQGFDG LLASLDVRGY RESHLQAMLQ MTEIFFKETV  1140
RRNMLHSNRR RHVKDTSKIE AVEMPSGYDC SGGTDSPTSS VSVADFDMLE SSMTFSIELG  1200
KDETEKTGAL NRYHDLEKWI WKECIGSSIL SADKNGKKRC PQLLDICNSC RGIFYFEENH  1260
CHSCHRTFGK GEVVFSQHVA LCKEKLNSNC SASSPLRMRL LKVLFALTEV YVPLEALQPL  1320
WTDMNRNSWG RKLHSSSSAE ELLQVLASLE SAIKTEYLSS NFETTSELLY CSNEKGCVTS  1380
NFSSPHRVSV LPWIPLTTAA VALRLMEFDA AISNMLQQKL ESHREKESGH FIKLPTRSAV  1440
MKSSQNKEKS GAPHQSEEFK EGQQEYLRSG LASPCHGLGC GQTRSGRVPK KAISLRGDPR  1500
KKSRVTSKDR LGQVHVLKWK GKPRAQGGRK RGNRSIRGNQ PTLNRIIQIG GERNSPKECV  1560
FYKPAENLGE ENWNEGETAA ENASGSGRTE YEEENGDASR DEFDHVNVDD YGRGFNGKSD  1620
DLLEGGDYNV EGYQDDVNED YDEGEAAQDT KGDPDYDGAR YINDEWDEEE CIADDGHQNR  1680
ILRNRNRSSS SDYSD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna17756.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM457473	2e-35	AM457473.2 Vitis vinifera contig VV78X112028.14, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011466929.1	0.0	PREDICTED: uncharacterized protein LOC101301986 isoform X1
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2P6RU03	0.0	A0A2P6RU03_ROSCH; Putative transcription factor & chromatin remodeling DDT family
STRING	XP_004303092.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	mrna17756.1-v1.0-hybrid