PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17908.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 246aa    MW: 28397.9 Da    PI: 9.6193
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17908.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.87.2e-12122206178
                              EEEE-..-HHHHT.T-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                       B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                              f+k+ltpsdv    +rl ++k+++++          +   +e+++++ +d+ g+++ +k++ + ++  +vlt+GWk F k+++L e
  mrna17908.1-v1.0-hybrid 122 FEKQLTPSDVRDGqSRLAMSKEYVQKRlmpllneneD--LNEGIDVMTYDLAGKEYPMKFRTWVSK-IHVLTAGWKAFRKDHKLVE 204
                              99********987799********999***9988543..44899****************999987.689**************98 PP

                              T- CS
                       B3  77 gD 78 
                              + 
  mrna17908.1-v1.0-hybrid 205 NQ 206
                              75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.8E-15122206IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-14122215IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-13122226No hitNo description
PfamPF023621.1E-7122206IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MISLTDEQDI KAAFNLCFMK HKIIDSEEEI QKLEDTKLKS LGQTSKYPNA EAKPSAQEIR  60
KKEEFTVNLQ LGLKRKAVQV EAMYVAQAAK PHEGLFYGNY TPPNLPPVPS LHQFIGICSE  120
PFEKQLTPSD VRDGQSRLAM SKEYVQKRLM PLLNENEDLN EGIDVMTYDL AGKEYPMKFR  180
TWVSKIHVLT AGWKAFRKDH KLVENQHWVT VWMFRNIATG KLCFVIEVRK LPVFDAIKRR  240
RTRQN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17908.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011466877.10.0PREDICTED: putative B3 domain-containing protein At4g03170
TrEMBLA0A2P6RSD21e-133A0A2P6RSD2_ROSCH; Putative transcription factor B3-Domain family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.15e-26B3 family protein