PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna17987.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 143aa MW: 15161.4 Da PI: 9.0098

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna17987.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.3e-05	21	43	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+ksF++ + L H++ H mrna17987.1-v1.0-hybrid 21 FQCRHCPKSFNNGHALGGHQNAH 43 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.0E-4	16	45	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.18E-6	17	45	No hit	No description
PROSITE profile	PS50157	10.907	21	48	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	23	43	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MAPSCKTTSE DSTANSGPKR FQCRHCPKSF NNGHALGGHQ NAHRGLDKGF MKTLKQIIRA 60 TYREQFPGNP SSPSVAAAAK LLPSAEVLAG LGVVKPGRLT EPELPGGGRT IDFLTQWKPV 120 CTGPIVPVEI EETLDLELKL GS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna17987.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF34189	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	4e-07	zinc finger protein 2

Link Out ? help Back to Top
Phytozome	mrna17987.1-v1.0-hybrid