PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18094.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 166aa    MW: 18784.3 Da    PI: 8.4532
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18094.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.71.8e-141564149
                             S---SHHHHHHHHHHHHHHHHHHHHHHH.HHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELS.vLCdaevaviifsstgklyey 49
                             k+ien   r vtf+kR+ gi  K +EL  +LC+aev v++fs+  k y y
  mrna18094.1-v1.0-hybrid 15 KKIENAEDRLVTFTKRKSGIYNKCNELAaTLCGAEVGVVVFSEFEKPYSY 64
                             68*************************559************98887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.0E-21767IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.778768IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-22883IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-10929IPR002100Transcription factor, MADS-box
PfamPF003193.1E-171664IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-104566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MASKKTRGKQ KIEIKKIENA EDRLVTFTKR KSGIYNKCNE LAATLCGAEV GVVVFSEFEK  60
PYSYGHPSIE SIADRFLNQQ SPQETNGDNI ASHVVGAYKQ ARITEILNKY NELQEKLSNE  120
QLREKELQQR EKARASEGLG WWQRPIKELD LEGTKENVCF LPAPP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18094.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305560.11e-120PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2P6RCY51e-74A0A2P6RCY5_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004305560.11e-119(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.11e-31AGAMOUS-like 57