PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18295.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YA
Protein Properties Length: 345aa    MW: 37953.6 Da    PI: 10.0665
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18295.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.52.6e-29149204258
                CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                               p+YVNaKQy++I++RRq+Rak+  e++  ++ rkpy+heSRh hA+rRpRg+gGrF
  mrna18295.1-v1.0-hybrid 149 GPIYVNAKQYRGIIRRRQSRAKAVMENRA-ARLRKPYMHESRHLHAMRRPRGCGGRF 204
                              69***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.5E-32146207IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.114147207IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.4E-26150204IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.5E-22150172IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.5E-22181204IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAMQTVHYKE HEGLGQLSSV LPWWGTAFGS QQAYGESCGH SKPFTMELPN SGNKLTATKQ  60
PGRGTEQGLD KEITNQFTMF PGDGKKSQPD ISLQSSPPKY RGHFELGFNQ PVICAKYPYM  120
DQCYGLFSTY GSQVSGRVML PLNLTTDEGP IYVNAKQYRG IIRRRQSRAK AVMENRAARL  180
RKPYMHESRH LHAMRRPRGC GGRFLNSKTS NNGKGGNGTK QVGDVQLFRH SGSQSSEVLH  240
SETGTLNSSK TNSSSSNISG SEVTSTYSRG DLDHFSMNHH LGHSVHSLSN MMDGSGSKDR  300
PATIWLLSEG NSFLARVHTG CLLPFQAFLL FGWLVKTPNA SQIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-15148212266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18295.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303411.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like
TrEMBLA0A2P6RCM91e-169A0A2P6RCM9_ROSCH; Putative transcription factor Hap2/NF-YA family
STRINGXP_004303411.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.21e-47nuclear factor Y, subunit A10