PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna18743.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 199aa MW: 22775.1 Da PI: 10.237

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna18743.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.4	8.1e-07	45	133	15	88
FAR1 15 rkskskkskrngeitkrtfvCskegkreeekkk............tekerrtra..etrtgCkaklkvkkek.dgkwevtkleleH 85 r+s s + ++++ k +f+C ++g+ ++ k+ +ek++r+r ++++gC +l+ ++ + w+++ + H mrna18743.1-v1.0-hybrid 45 RRSDSGQIGNKKKRPKVRFCCERNGQYKSCKSLkfdtimeesnveSEKKKRPRLtgTKKCGCPFSLRGTNIGnGDDWKLEVVCGVH 130 33333344667777899*******99988878*****995555555541166777777777666667999****** PP FAR1 86 nHe 88 nH+ mrna18743.1-v1.0-hybrid 131 NHA 133 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08731	1.6E-6	21	133	IPR014842	Transcription factor AFT

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MKVEVDDVLD HTTQFTTDKV FESKVEMIEW TRSEGIRNNF VIVIRRSDSG QIGNKKKRPK 60 VRFCCERNGQ YKSCKSLKFD TIMEESNVES EKKKRPRLTG TKKCGCPFSL RGTNIGNGDD 120 WKLEVVCGVH NHAASKYLHG HSFVGRLSEE ENSLLVDMST SLIRPKDILT AIKRRNSKNV 180 TTMKTIYNAR QRYRDPAK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	102	KKKRPRLTGTKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna18743.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011468456.1	1e-147	PREDICTED: uncharacterized protein LOC105352626
TrEMBL	M5W105	1e-68	M5W105_PRUPE; Uncharacterized protein (Fragment)
STRING	XP_004305166.1	1e-139	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF180	11	22

Link Out ? help Back to Top
Phytozome	mrna18743.1-v1.0-hybrid