PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna18951.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Protein Properties

Length: 254aa MW: 28915.5 Da PI: 8.8706

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna18951.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.3	2e-11	129	235	2	97
EEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHH CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvka 71 +k+lt sd ++++rl +p ++++ ++k +k++t++d++ + ++++ k+s++yv+ + WkeFvk mrna18951.1-v1.0-hybrid 129 KKKLTMSDLGNLSRLLVPGYMVKNFvlplvdadfkqrvESK--AGKQVTVKDSDKeteHQLTFRY--LKSSKSYVFNGKWKEFVKR 210 5899999******99999997779999999999864433..5678999996666456666666..*************** PP HT--TT-EEEEEE-SS.SEE..EEEEE CS B3 72 ngLkegDfvvFkldgr.sefelvvkvf 97 +Lk D + ++ d + s+f +++v+ mrna18951.1-v1.0-hybrid 211 RDLKKDDEIGLYWDTHdSKF--HFSVL 235 **********77433555..77776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	6.28E-16	128	239	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.0036	128	238	IPR003340	B3 DNA binding domain
CDD	cd10017	1.30E-15	128	236	No hit	No description
PROSITE profile	PS50863	8.839	128	238	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.2E-18	129	249	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.0E-8	130	234	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MEEKPLMKTL NMIDKLMYEV NSPSSGSSSS STNKTAESSQ QLCDAPTDIT LHQSWLQLPS 60 NTNKRKAKAP VTPENEDRIQ KPAAPTNPEH QKLVVSDQEN IESNSKSDDG ENLHDPEQVA 120 RDLTLYKIKK KLTMSDLGNL SRLLVPGYMV KNFVLPLVDA DFKQRVESKA GKQVTVKDSD 180 KETEHQLTFR YLKSSKSYVF NGKWKEFVKR RDLKKDDEIG LYWDTHDSKF HFSVLKVASQ 240 ERQAATEVAR ANQQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna18951.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011470509.1	0.0	PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBL	A0A2P6SGG3	7e-72	A0A2P6SGG3_ROSCH; Putative transcription factor B3-Domain family

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF579	12	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33720.1	2e-17	B3 family protein

Link Out ? help Back to Top
Phytozome	mrna18951.1-v1.0-hybrid