PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18952.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 185aa    MW: 21626.3 Da    PI: 7.2343
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18952.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.85.1e-1022811273
                             HTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                       B3 12 ksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73
                             +   l +p +f +++   +++k++   +   d  +rsWev +  r++ + +vl++GWk+F +a+g
  mrna18952.1-v1.0-hybrid 22 NDTELEIPLSFSNKYmveDNEKHG--SVH-LDGYNRSWEVSV--RRRHDFVVLGRGWKKFINAHG 81
                             5566899****9999874333333..455.66789*******..*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-9681IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-9781IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-72281IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.9E-4109157IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-6109157IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEKLSPNDLP FFLAKFDKAG INDTELEIPL SFSNKYMVED NEKHGSVHLD GYNRSWEVSV  60
RRRHDFVVLG RGWKKFINAH GPFYRRLVEA GMGQFQFRLK SYPWIRDDVE LTCNNRNYII  120
FGAGWQEFVE AYEIHPNDWV HLRFVPESRS IVVTAFRWTD RVRYAATQAP VPSLDPHPSS  180
SSEST
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18952.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309848.15e-71PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_004308413.11e-119(Fragaria vesca)