PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19367.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 246aa    MW: 28544.1 Da    PI: 10.4549
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19367.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.43.6e-151496192
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                       B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87
                             ffkvl+p   ++++ l +p  f+  ++    ++++  + ++   sW+vk+   k++++  ++++GW +Fv+ + L++g+f+vF+++g+
  mrna19367.1-v1.0-hybrid 14 FFKVLMP--GFRKK-LGIPVAFC-LNE----NKMDAAMIQSCQGSWDVKV--GKSGNGqLYFKEGWLKFVNHHSLRVGEFLVFEHKGN 91
                             7888844..45554.99******.333....347899999999*******..666666699***********************9998 PP

                             SEE.. CS
                       B3 88 sefel 92
                             + f+ 
  mrna19367.1-v1.0-hybrid 92 MVFNV 96
                             88854 PP
2B363.82.7e-20143230187
                              EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                       B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                              f ++++ps+  k+   + +p +f+e++g+ +++   +tl d+s   W+v l++  +kk++r+++++GW eF +an+L+++D+++F+
  mrna19367.1-v1.0-hybrid 143 FRTIMKPSHRDKRnPYMNIPPSFVEANGIAHKS--SMTLIDPSRHHWKVDLKHwkEKKRQRVTMARGWTEFYRANKLNDRDVCIFE 226
                              678899999998844689*********988766..59999***********9955566666************************* PP

                              E-SS CS
                       B3  84 ldgr 87 
                              l+++
  mrna19367.1-v1.0-hybrid 227 LHQK 230
                              8764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-177102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-189108IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.9E-1314107IPR003340B3 DNA binding domain
PfamPF023624.3E-111496IPR003340B3 DNA binding domain
CDDcd100174.03E-141496No hitNo description
PROSITE profilePS5086310.51850102IPR003340B3 DNA binding domain
SuperFamilySSF1019361.75E-20139231IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-22140244IPR015300DNA-binding pseudobarrel domain
CDDcd100172.09E-16141231No hitNo description
SMARTSM010196.0E-17143236IPR003340B3 DNA binding domain
PfamPF023629.9E-17143230IPR003340B3 DNA binding domain
PROSITE profilePS5086311.857144246IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAGTRMLQSS PTKFFKVLMP GFRKKLGIPV AFCLNENKMD AAMIQSCQGS WDVKVGKSGN  60
GQLYFKEGWL KFVNHHSLRV GEFLVFEHKG NMVFNVVSYG LSACEKEYHF PSDSMVNGRM  120
TTPHETQRVK RPRDDNLEGT HFFRTIMKPS HRDKRNPYMN IPPSFVEANG IAHKSSMTLI  180
DPSRHHWKVD LKHWKEKKRQ RVTMARGWTE FYRANKLNDR DVCIFELHQK TAVSKNVVVN  240
VKICCH
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna19367.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306894.10.0PREDICTED: B3 domain-containing protein REM9-like
STRINGXP_004306893.11e-168(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14574917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.14e-25B3 family protein