PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20074.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 373aa    MW: 40811.9 Da    PI: 9.2999
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20074.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.23.3e-1622127286
                 trihelix   2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                              Wt  e+++Liea++ +eer   ++                    ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk++e e
  mrna20074.1-v1.0-hybrid  22 WTVGETMVLIEAKKMDEERRVMKRsgsssrdhgadetprsiikPAELRWKWVEDYCWKKGCLRSQNQCNDKWDNLMRDYKKVREYE 107
                              *************95555544322234556667777777777799***************************************** PP

                 trihelix  69 kkrt..sessstcpyfdqle 86 
                              ++ +   ++ ++ p + +le
  mrna20074.1-v1.0-hybrid 108 RRSSvvGGENKELPSYWKLE 127
                              99743355556666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.261497IPR017877Myb-like domain
PfamPF138372.7E-1121127No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MAEIQGGNSG SFVMRDYRKG NWTVGETMVL IEAKKMDEER RVMKRSGSSS RDHGADETPR  60
SIIKPAELRW KWVEDYCWKK GCLRSQNQCN DKWDNLMRDY KKVREYERRS SVVGGENKEL  120
PSYWKLEKSE RKERNLPTNM VPQIYDALVE VVEKREMGRI VVGGNGGGGG ASISGSISPN  180
PNIGYVVERP MISGVHHSTV LSPPVMQQQL IQAQPIAAVH LLPAPLAAQP PPPLPYSQPI  240
PPVGSDTDTS EHSDSPAKRR RRGGGRASGG GGDQQQGIST SGTVSAGTSS EVGTAISRGA  300
SIIAEALQGC EEREERRHRE ILSMHERRIQ IEETKTEVNR QGISGLVDAI NKLANSIHAL  360
ASNNQSQSSA PK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263271GGRASGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna20074.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460456.10.0PREDICTED: uncharacterized protein LOC101296473 isoform X2
TrEMBLA0A2P6Q7270.0A0A2P6Q727_ROSCH; Putative transcription factor MYB family
STRINGXP_004295476.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68043242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.13e-58Trihelix family protein