PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20254.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 233aa    MW: 25655.2 Da    PI: 9.5333
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20254.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-081331552346
                              -HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding  23 tWktIartmgkgRtlkqcksrwqk 46 
                              +W++Ia +++ gRt++++k++w++
  mrna20254.1-v1.0-hybrid 133 RWSLIAGRLP-GRTDNEIKNYWYT 155
                              6*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.3E-7128164IPR009057Homeodomain-like
PROSITE profilePS500906.168129157IPR017877Myb-like domain
CDDcd001671.30E-6133157No hitNo description
Gene3DG3DSA:1.10.10.601.4E-11133157IPR009057Homeodomain-like
PfamPF002493.5E-6133155IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDREGSSGLR LQIHALHRSS GERRPPQLIP PLRCYVHQGG NLGRIQVQAI LQSNADGGAG  60
FLPVFQCHNG AKRVGSWCIS KARPELLRPP CQSSSTIQIG LTVLSGMRPI RNSSSPDRLN  120
LVMRCCSSGV FLRWSLIAGR LPGRTDNEIK NYWYTRLSKK IQQKEKQSNN EANGTIQFPA  180
VDEKPSVAND DQKVHVEMKQ ECLAAAAGTS AALIKKEEVI DSEDYSNTYI NN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna20254.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.12e-13myb domain protein 82