PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna20491.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

WOX

Protein Properties

Length: 190aa MW: 21832.8 Da PI: 9.0701

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna20491.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.1	4.2e-20	84	144	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t++++qle+Le+ +++ n +p +++ +e++k+l ++te++V++WFqNrRa+ k+ mrna20491.1-v1.0-hybrid 84 RQRWTPSNTQLEILERIYNEaNGTPGKHRVKEITKELsqhgHVTETNVYNWFQNRRARSKR 144 89***************99************************************97 PP
2	Wus_type_Homeobox	93.5	1.9e-30	83	146	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtP+++Q++iLe++y+++ tP k+++++it+eL+++G+++++NV++WFQNr+aR+++kq mrna20491.1-v1.0-hybrid 83 ARQRWTPSNTQLEILERIYNEANGTPGKHRVKEITKELSQHGHVTETNVYNWFQNRRARSKRKQ 146 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.349	80	145	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-16	80	148	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.42E-18	82	147	IPR009057	Homeodomain-like
SMART	SM00389	1.3E-11	82	149	IPR001356	Homeobox domain
Pfam	PF00046	1.0E-17	84	144	IPR001356	Homeobox domain
CDD	cd00086	3.44E-12	84	146	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MEGQRRVLAV KLERLRTQNP DGFCVMTDDQ VEQLQKQIAV YAVICEQLVD MHKAFTAQQD 60 LAGMKMGNVY GDLMPFGGNK VTARQRWTPS NTQLEILERI YNEANGTPGK HRVKEITKEL 120 SQHGHVTETN VYNWFQNRRA RSKRKQSVPT RNMTELDIEP EVISPKDKKT KPEDMYFRSP 180 DSGIENFFA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	145	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna20491.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004300539.1	1e-138	PREDICTED: WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	2e-59	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2P6PBJ9	1e-121	A0A2P6PBJ9_ROSCH; Putative transcription factor Homobox-WOX family
STRING	XP_004300539.1	1e-137	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	9e-57	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	mrna20491.1-v1.0-hybrid

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]