PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20622.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 432aa    MW: 47638.6 Da    PI: 6.5165
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20622.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-12366411655
                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  mrna20622.1-v1.0-hybrid 366 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKNLQ 411
                              689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085360410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-16363425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.06E-13364415No hitNo description
Gene3DG3DSA:4.10.280.105.6E-15365422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-13366416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9366411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MESDLQQQHH KPQQHVNSSS LLRYRSAPSS YFANILDTEF NEPFFNRAPS PETERILARF  60
MSSQGGDIGG TEEIVPHQKV ETTQQPQFLV PKLDNDAAMI QEQEQQQQQQ RQQQQQQQQQ  120
SHMNNYTSQG FYQIPSTKPP LPNQNLASSN EGAAAAYPMG SNQFPLMKTG GVTHSNLIRH  180
SSSPAGLFAN INIDVAGYAA LRGMGNVGAS NGTNEDSSFS PASRLKNFSS GPPSSTSSMM  240
SPISEVGEKR MRSNNQDRTG GGFSEGRGNN YVSGFPMGSW EDSSLLADDI IGSTNFRDDD  300
DDVKTITGLS ASETQNMEAR GRPLAHHLSL PKTSAEMAAI ENFLQFQDSV PCKIRAKRGC  360
ATHPRSIAER VRRTRISERM RKLQELVPNM DKQTNTADML DLAVDYIKNL QTEVQTLSEA  420
RAKCTCSNQQ Q*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna20622.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004295210.10.0PREDICTED: transcription factor bHLH122-like
TrEMBLA0A2P6QLY30.0A0A2P6QLY3_ROSCH; Putative transcription factor bHLH family
STRINGXP_004295210.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.16e-69bHLH family protein