PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20808.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25542.8 Da    PI: 8.2458
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20808.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.92.6e-28959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k+i+n + rqvtfskRr g+lKKAeELSvLCda++a+iifsstgkl+ey+s
  mrna20808.1-v1.0-hybrid  9 KKIDNATARQVTFSKRRRGLLKKAEELSVLCDADIALIIFSSTGKLFEYAS 59
                             68***********************************************86 PP
2K-box31.85.9e-12921421969


   


	

		Protein Features
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3D Structure
	

		Database
		Entry ID
		E-value
		Start
		End
		InterPro ID
		Description
	


	
PROSITE profilePS5006630.572161IPR002100Transcription factor, MADS-box
SMARTSM004326.1E-40160IPR002100Transcription factor, MADS-box
CDDcd002651.02E-40275No hitNo description
PRINTSPR004043.4E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-31375IPR002100Transcription factor, MADS-box
PfamPF003197.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.96887174IPR002487Transcription factor, K-box
PfamPF014861.4E-992142IPR002487Transcription factor, K-box

	 
  
 


	

		Gene Ontology ? help Back to Top
	

	

		GO Term
		GO Category
		GO Description
	


	
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity

	  
 


        

                Plant Ontology ? help Back to Top
        

        

                PO Term
                PO Category
                PO Description
        


        
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage

         


	

		Sequence ? help Back to Top
	

		

		Protein Sequence    Length: 225		aa    
		Download sequence    Send
		to blast
	

	

		
MAREKIQIKK IDNATARQVT FSKRRRGLLK KAEELSVLCD ADIALIIFSS TGKLFEYASS  60
SMKEILERHH LHSKNLDKLE QPSLELQLVE NSNYSRLSKE ITAKSHQLRQ MRGEELHGLN  120
LEELQQLEKS LESGMGRVIE KKVVERTDGG RRHVHADSDN RFTEEGQSSE SVTNLCNSNN  180
SPQDYDSSDT SLKLGIDPNK VLRYEGSTLL RRATIFWLTG NSLW*

	




   


	

		3D Structure ? help Back to Top
	

	
Structure
	
	
	
	

		PDB ID
		Evalue
		Query Start
		Query End
		Hit Start
		Hit End
		Description
	


	
5f28_A3e-22169169MEF2C
5f28_B3e-22169169MEF2C
5f28_C3e-22169169MEF2C
5f28_D3e-22169169MEF2C
	
Search in ModeBase

	     

  
    
  



	
		

	

	Functional Description  ? help
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		Source
		Description
	

	
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
	
	
	
	



	
	

        

                Binding Motif
                ? help Back to Top
        

        

                Motif ID
                Method
                Source
                Motif file
        

	
        
MP00272DAPTransfer from AT2G22540Download
	

	

	Motif logo
	

	



 


        

                Cis-element
                ? help Back to Top
        

        
SourceLink
PlantRegMapmrna20808.1-v1.0-hybrid




	
	        

        

        Regulation -- PlantRegMap  ? help
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                Source
                Upstream Regulator
		Target Gene
        

        
PlantRegMapRetrieveRetrieve
	

	        


	










 
	

	

		Annotation --
		Nucleotide ? help
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		Source
		Hit ID
		E-value
		Description
	

	
GenBankKP1649981e-136KP164998.1 Malus domestica dormancy-associated MADS-box transcription factor (DAM3) mRNA, complete cds.
GenBankLC0047301e-136LC004730.1 Malus domestica MdJb mRNA for JOINTLESS like protein MdJOINTLESSb, complete cds.

	  
	

	

		Annotation -- Protein
		? help Back to Top
	

	

		Source
		Hit ID
		E-value
		Description
	

	
RefseqXP_011468571.11e-134PREDICTED: MADS-box protein JOINTLESS 
RefseqXP_011468575.11e-134PREDICTED: MADS-box protein JOINTLESS 
SwissprotQ9FUY67e-93JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A2P6RPZ31e-123A0A2P6RPZ3_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004288518.11e-132(Fragaria vesca)

   
 


	

		Orthologous Group
		? help Back to Top
	

	
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
  
	

        

                Best hit in Arabidopsis thaliana ? help
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                Hit ID
                E-value
                Description
        

	
AT2G22540.15e-77MIKC_MADS family protein



 
  
 


	

		Publications
		? help Back to Top
	

	

	
	
    
	
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]
    2.