PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21000.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 262aa    MW: 28984 Da    PI: 9.0764
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21000.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-1270116354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              ++h+++E+rRRdriN  +++Lr+l+P++      K++Ka+ L  +++ +k+L
  mrna21000.1-v1.0-hybrid  70 KSHSQAEKRRRDRINAQLATLRKLIPQS-----DKMDKAALLGSVIDEVKDL 116
                              79*************************8.....7***********9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.93267116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-1368126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-1470119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.56E-1070118No hitNo description
PfamPF000103.3E-1070116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-1073122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048739.92E-6167232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MENCYYAEGP NWINQYQTAA AVSNESSSFQ VPWPNVSNST PFQFCGGFPP SWSSTGEGLA  60
EEDRAASASK SHSQAEKRRR DRINAQLATL RKLIPQSDKM DKAALLGSVI DEVKDLKRRA  120
NEVSKALMVP TEFDDVTVSQ CDLVHEGTPT NSTSINKNKD NSIMIRVSVC CDDQPELFRE  180
LIQVLKRLKL TAMKADIASA GGRIKSIFVL CSKDSEETVS ISNLKQALKL VLSKIAASSA  240
TPNCRIRSKR QRFFLPFQYP K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21000.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307674.10.0PREDICTED: transcription factor bHLH51
TrEMBLA0A2P6SLC61e-164A0A2P6SLC6_ROSCH; Putative transcription factor bHLH family
STRINGXP_004307674.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-50bHLH family protein