PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21001.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 256aa    MW: 27923.2 Da    PI: 4.9146
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21001.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-181156147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             +g+W+++Ed  l+++v+++G+++W++I++ ++ gR++k+c++rw + 
  mrna21001.1-v1.0-hybrid 11 KGSWSPQEDATLIKLVAEHGPRNWSLISSGIP-GRSGKSCRLRWCNQ 56
                             799*****************************.***********985 PP
2Myb_DNA-binding543.8e-1764107247
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +++T+ Ed  +v a++++G++ W+tIar ++ gRt++ +k++w++ 
  mrna21001.1-v1.0-hybrid  64 KPFTPAEDAAIVTAHALHGNK-WATIARLLP-GRTDNAIKNHWNST 107
                              68*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.347661IPR017930Myb domain
SuperFamilySSF466891.24E-298104IPR009057Homeodomain-like
SMARTSM007173.5E-161059IPR001005SANT/Myb domain
PfamPF002491.4E-181156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-241264IPR009057Homeodomain-like
CDDcd001672.11E-151355No hitNo description
SMARTSM007171.2E-1462110IPR001005SANT/Myb domain
PROSITE profilePS5129420.48662112IPR017930Myb domain
PfamPF002492.6E-1464107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2365111IPR009057Homeodomain-like
CDDcd001674.32E-1265108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MSAGAGDNRV KGSWSPQEDA TLIKLVAEHG PRNWSLISSG IPGRSGKSCR LRWCNQLSPD  60
VQHKPFTPAE DAAIVTAHAL HGNKWATIAR LLPGRTDNAI KNHWNSTLRR RRLAESSSTS  120
SESMKRLIVG GGGAEPEMKR QCLRGAEEES GFKAVTAGVE GVLTSLTLSP PGEKVGDDVV  180
LKSEEEEVEE EEENEEHQEE AVDDGEKCTV EMEETCLMSM MQRMIAQEVR NYIESLRAEN  240
GLAFGLQSAV HDPKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-37101113104MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-361011157158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-361011157158MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-37101113104C-Myb DNA-Binding Domain
1msf_C3e-37101113104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21001.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024164121.11e-137transcription factor MYB73-like
SwissprotO231601e-53MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2P6SLB71e-135A0A2P6SLB7_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004308944.11e-139(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116002935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.12e-50myb domain protein r1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]