PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21007.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 285aa    MW: 32414.8 Da    PI: 8.3488
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21007.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.92.6e-131697185
                 trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85
                             +W+++ + +Li+a  ++  rl+rg+l++++W ev++++   r++ + ++  qCk++++ l+k+yk +k           s++ ++d l
  mrna21007.1-v1.0-hybrid 16 CWSDDATSVLITAWGDRYLRLNRGNLRQKDWTEVADAVnsrRDGAVYKTDGQCKNRIDTLKKKYKLEKSKPFP------SSWIFYDTL 97
                             7**************************************9888999*******************98865443......346666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-2414100No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MERPTRPYAP GGREDCWSDD ATSVLITAWG DRYLRLNRGN LRQKDWTEVA DAVNSRRDGA  60
VYKTDGQCKN RIDTLKKKYK LEKSKPFPSS WIFYDTLDSL IGVPSSSNAA VLNKPSKQPL  120
TLALTLKAAD PPSPESDDDV EEEEGGVGLG GGAACRELAR AILKFGEIYE RMERSKQDQE  180
VELEKQRMAF TKELEVERLN MFMDAQLELE KMRKKRPKYS HSSGTDSLGF RAFSLRQFCS  240
MPILQATVRS CELRLQEQQN YIIHRFAARF KHLGAERPML CVHE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21007.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308948.21e-165PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG81e-33ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2P6SLD51e-114A0A2P6SLD5_ROSCH; Putative transcription factor Trihelix family
STRINGXP_004308948.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.13e-55sequence-specific DNA binding transcription factors