PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21124.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 239aa    MW: 27256.6 Da    PI: 9.2022
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21124.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.27.1e-33161219159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  mrna21124.1-v1.0-hybrid 161 LDDGYKWRKYGQKVVKNTQHPRSYYRCTMDNCRVKKRVERLAEDPRMVITTYEGRHAHS 219
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-34146219IPR003657WRKY domain
SuperFamilySSF1182904.84E-29153220IPR003657WRKY domain
PROSITE profilePS5081129.344156221IPR003657WRKY domain
SMARTSM007741.6E-37161220IPR003657WRKY domain
PfamPF031061.7E-25162218IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MLNQRGLFDQ NQDQAPIQMG FFSYPPNNLT FSSLGCQQSV KALSSLPSSL GSDDHHASST  60
NLSETLIPSL NTPQKHRETH ITSDFGGSQL LSLQRSSANL WAWGDQVSEC LSSKRSSSDI  120
HDHHHVGLGV SEMKMKKIKA IRRKVREPRF CFKTMSEVDV LDDGYKWRKY GQKVVKNTQH  180
PRSYYRCTMD NCRVKKRVER LAEDPRMVIT TYEGRHAHSP SHDLEDSESP SRLNNFFW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-26153218974Probable WRKY transcription factor 4
2lex_A1e-26153218974Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21124.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288129.10.0PREDICTED: probable WRKY transcription factor 13
RefseqXP_011464710.10.0PREDICTED: probable WRKY transcription factor 13
RefseqXP_011464713.10.0PREDICTED: probable WRKY transcription factor 13
SwissprotQ9SVB73e-60WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A2P6RRK41e-160A0A2P6RRK4_ROSCH; Putative transcription factor WRKY family
STRINGXP_004288129.11e-180(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.15e-54WRKY DNA-binding protein 13