PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21167.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 216aa    MW: 24354.6 Da    PI: 4.3899
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21167.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-17103153255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp     k  r++lg+f+t  +Aaka++ a+ kl+g
  mrna21167.1-v1.0-hybrid 103 HYRGVRRRP-WGKFAAEIRDP---ArKGSRVWLGTFDTDVDAAKAYDCAAFKLRG 153
                              7********.**********8...4445**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-31102162IPR001471AP2/ERF domain
SMARTSM003801.0E-36103167IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-22103162IPR016177DNA-binding domain
PROSITE profilePS5103224.579103161IPR001471AP2/ERF domain
CDDcd000186.06E-28103161No hitNo description
PfamPF008472.0E-12103153IPR001471AP2/ERF domain
PRINTSPR003673.7E-13104115IPR001471AP2/ERF domain
PRINTSPR003673.7E-13143163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAATQEQDES TLELIRQHLL GDFTFTDNFI TNLNFDQTPE LYFQPIIKSE YSISESESTS  60
PVSSCLNPKP EPVTEEEPMS SEPKRKSSSS SNSSSSTGEV SRHYRGVRRR PWGKFAAEIR  120
DPARKGSRVW LGTFDTDVDA AKAYDCAAFK LRGRKAILNF PLEAGESNPP SNTGRKRRKA  180
VKQEEEEEEE EEEEKAPEPE ELEVQSWVDW DGEEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-27102162161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173179GRKRRKA
2173182GRKRRKAVKQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21167.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307780.11e-156PREDICTED: ethylene-responsive transcription factor ERF106-like
SwissprotQ9LY051e-49EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A3S8T9271e-128A0A3S8T927_FRAAN; Transcription factor ERF74
STRINGXP_004307780.11e-156(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.14e-44ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]