PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna21311.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 238aa MW: 25944.3 Da PI: 8.4829

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna21311.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.1	2.7e-42	52	151	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq mrna21311.1-v1.0-hybrid 52 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQ 137 7*********************************************************************************** PP DUF260 87 leqlkaelallkee 100 +++l+ael++++ e mrna21311.1-v1.0-hybrid 138 VQSLQAELNTVRGE 151 *******99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.756	51	152	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-42	52	149	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MSRDRERFDF DEIGKKLKRE IDASNSSSAH LHHQMGRRHM LGPPGTLNTI TPCAACKLLR 60 RRCAQECPFS PYFSPHEPQK FASVHKVFGA SNVSKMLMEV PESQRADAAN SLVYEANVRL 120 RDPVYGCMGA ISALQQQVQS LQAELNTVRG EILKFKYREA NLMDPSSHHH QVAALFSTTT 180 TSGGAVSVAS LPPSTQPPPP PPPPPLPPTS SSSSMYTQPN SATDYSTLSS ENVSYFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-44	44	159	3	118	LOB family transfactor Ramosa2.1
5ly0_B	4e-44	44	159	3	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna21311.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004307714.1	1e-176	PREDICTED: LOB domain-containing protein 15
Swissprot	Q8L5T5	1e-83	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2P6SLM5	1e-137	A0A2P6SLM5_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_004307714.1	1e-176	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	9e-83	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	mrna21311.1-v1.0-hybrid

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]