PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21403.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 170aa    MW: 18180.7 Da    PI: 11.0087
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21403.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.3e-211162156
                      AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             ++y+GVr ++ +gr++AeIrd ++    ++r++lg+f+++eeAa a++ a+++l+g+
  mrna21403.1-v1.0-hybrid 11 PHYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDSPEEAALAYDDAARALRGN 62
                             68********.**********883....5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.28E-291168No hitNo description
PfamPF008474.0E-141161IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-221269IPR016177DNA-binding domain
SMARTSM003803.9E-351275IPR001471AP2/ERF domain
PROSITE profilePS5103222.1021269IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-311269IPR001471AP2/ERF domain
PRINTSPR003671.8E-101324IPR001471AP2/ERF domain
PRINTSPR003671.8E-103551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MAGGSVSGQQ PHYRGVRKRP WGRYAAEIRD PWKKTRVWLG TFDSPEEAAL AYDDAARALR  60
GNKAKTNFKL PPLTRGGGGG VADLSLNLNV SSAQRASHSG RLVEFLRTGV LKKSENAAAG  120
PSFVVSRVGP RPPVVGSSLV EEGSSTLSYM GFVRRGLPID LNEPPPLWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-201270261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-201270564ATERF1
3gcc_A3e-201270564ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21403.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470022.11e-119PREDICTED: ethylene-responsive transcription factor 12-like
SwissprotQ94ID66e-41ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A3S8T9921e-117A0A3S8T992_FRAAN; Transcription factor ERF59
STRINGXP_004307758.11e-118(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.11e-27ERF domain protein 12