PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21440.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 274aa    MW: 30470.4 Da    PI: 7.3244
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21440.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH451.9e-1470121155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              ++ +hn+ Er RR++iN+ ++ Lr+l+P +   ++k+ls  +++ ++ +YI +Lq
  mrna21440.1-v1.0-hybrid  70 KKLNHNASERERRKNINNLYSSLRSLVPAD---HAKRLSIPATVSRVLKYIPELQ 121
                              6789**************************...9******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.08169120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1570138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-1070125No hitNo description
Gene3DG3DSA:4.10.280.101.7E-1370136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-1270121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-975126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MLGLSPPLFS TIAWPLEDHP TSYDHNNYFS AESSLLHFPT TLQPQFDQLD DHSTPSTAVS  60
GESNISSMAK KLNHNASERE RRKNINNLYS SLRSLVPADH AKRLSIPATV SRVLKYIPEL  120
QQQVEGLIQK RDELLSKNFK QENVTLQEEE QAKGTAARRS RSSVSAVITT RLSDTEVSIQ  180
ISTITSSHNF ISRILQTLEE DGLELLNASS FESSGGRVFY NLHLQIGMRE DKREAHVVIC  240
MSKSDSRGLS DKLMCLPLTT VVSVTTLSIK TKV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21440.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011469475.11e-165PREDICTED: transcription factor ORG2-like
TrEMBLA0A2P6PQW61e-135A0A2P6PQW6_ROSCH; Putative transcription factor bHLH family
STRINGXP_004290411.11e-135(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-49bHLH family protein