PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna21453.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

TCP

Protein Properties

Length: 160aa MW: 17553.6 Da PI: 8.2335

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna21453.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	85.9	9.9e-27	17	101	4	88
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 +k ++ + Tkv+g + R Rl+ +caa +F+ ++eLG+++d++tieWLl+qa+p+i tg+s ++++ +++ s+++++ + + mrna21453.1-v1.0-hybrid 17 GKASSEDNNTKVDGHGHRTRLPPTCAAWIFQFTRELGHKTDGQTIEWLLKQAEPSILVVTGNSVTPSNTSSTLVSVNMQAGNVVS 101 789999********************************************************99999777444444444322222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.7E-20	20	106	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	16.851	21	75	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MGTNPWNASR SRNKVLGKAS SEDNNTKVDG HGHRTRLPPT CAAWIFQFTR ELGHKTDGQT 60 IEWLLKQAEP SILVVTGNSV TPSNTSSTLV SVNMQAGNVV SEDKNSLRKK CTKGGGQPMP 120 PPYDHYLKII TKNYSIEFSV NDVAIDVGIE AQREDERQD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna21453.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011459878.1	1e-117	PREDICTED: transcription factor TCP8-like
TrEMBL	W1PHC6	1e-25	W1PHC6_AMBTC; Uncharacterized protein
STRING	ERN09397	2e-26	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	5e-28	TCP family protein

Link Out ? help Back to Top
Phytozome	mrna21453.1-v1.0-hybrid