PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna21454.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

TCP

Protein Properties

Length: 176aa MW: 18747.6 Da PI: 4.3664

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna21454.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	63.3	9.4e-20	21	107	4	97
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaessss 80 +k ++s h k +g +Rl+ +c ar+ +L+deLGfd +++t+eWLl+ +p+i ++tg + ++ mrna21454.1-v1.0-hybrid 21 GKASTSVGHGKDEGGECGIRLPKKCVARLVQLTDELGFDDNGQTVEWLLNTVEPSIVAATGRsvssintpsT---------QAPAP 97 688888899999999999********************************************5554433321.........11111 PP TCP 81 sasnsssgkaaksaaks 97 s++ a++++++ mrna21454.1-v1.0-hybrid 98 STQ-------ATEDMEE 107 111.......1111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	11.113	25	79	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.3E-15	39	117	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MGTVPNFSTK ASSSSNQLFH GKASTSVGHG KDEGGECGIR LPKKCVARLV QLTDELGFDD 60 NGQTVEWLLN TVEPSIVAAT GRSVSSINTP STQAPAPSTQ ATEDMEENAT VSLEDKDLVK 120 KKRANAGQPL PLPYDDFMRL VTNYDLEFSA NDVAVDVGIP AHEENNNQDG QERLG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna21454.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011459879.1	1e-128	PREDICTED: transcription factor TCP9-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF34235	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	3e-16	TCP family protein

Link Out ? help Back to Top
Phytozome	mrna21454.1-v1.0-hybrid