PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21477.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 154aa    MW: 17611.2 Da    PI: 8.4652
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21477.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.51.1e-1014441545
                             HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgk 45
                              R   + KKA+ELS+LC+++v++i f ++++
  mrna21477.1-v1.0-hybrid 14 DRERNLCKKANELSILCGTDVCMITFKPHNT 44
                             5888899******************987664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.53E-10855IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.349839IPR002100Transcription factor, MADS-box
PfamPF003192.4E-101549IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MDKVPSFRRK LLRDRERNLC KKANELSILC GTDVCMITFK PHNTKPETWP QERTELQKSI  60
ALSKSTRLDP KKMKLDLSFS DSYDSETRGK KLHADYNALN PEEAMAMEMQ YQEGTAKHPQ  120
NELIGDDEAK LASLEVKLQA ITKRIASMEA NYF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21477.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470562.11e-112PREDICTED: uncharacterized protein LOC105353257
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3254822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.21e-10M-type_MADS family protein