PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna21528.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 249aa MW: 28288.1 Da PI: 7.2743

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna21528.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.1	7.1e-29	84	171	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fYn Y+ ++GF++r+++ ++sk++g+i+ rtfvCskeg+r++++++ +k+ ++ra tr+gC a+l +kk + gkw vtk+ +eHnH mrna21528.1-v1.0-hybrid 84 FYNVYGLRMGFNTRMNYLSRSKHDGTIIARTFVCSKEGYRKPDRRD-KKTINPRAPTRVGCMAMLSIKKLNIGKWIVTKFIKEHNH 168 9****************************************999.99*********************************** PP FAR1 88 ela 90 +l mrna21528.1-v1.0-hybrid 169 ALI 171 995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-25	84	171	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MNFHIAVASV PDINVAHEVS NASTDAEFKR YNDGAVVGTS LQKILWVVQN DDMTQNSSQD 60 GSPVEVDEPY VGQEFGTEVD AQAFYNVYGL RMGFNTRMNY LSRSKHDGTI IARTFVCSKE 120 GYRKPDRRDK KTINPRAPTR VGCMAMLSIK KLNIGKWIVT KFIKEHNHAL IASKRPKGLV 180 EDQIPDDKKK IEELNRELFL ERERSTSLRK VIDLLFEHIE EHTQDLSNKV QHVVDEVKEI 240 ESEGKKPS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna21528.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004302184.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 12-like
TrEMBL	A0A315A5A0	1e-113	A0A315A5A0_PRUYE; Uncharacterized protein
TrEMBL	M5W2V7	1e-115	M5W2V7_PRUPE; Uncharacterized protein
STRING	XP_004302184.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-60	FAR1 family protein

Link Out ? help Back to Top
Phytozome	mrna21528.1-v1.0-hybrid