PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna21669.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 234aa MW: 26291.7 Da PI: 9.0423

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna21669.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.5	2.2e-28	69	156	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H mrna21669.1-v1.0-hybrid 69 FYNAYATHVGFIIRVSKLSRSRRDGTAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTH 152 ****************************************9988..9*********************************** PP FAR1 88 elap 91 +l+p mrna21669.1-v1.0-hybrid 153 PLTP 156 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-25	69	156	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MEGSRAGDDN ETGGSSVEGA FQLGQDDKLI LDSSGRNLIP SAIPVVSVVS ADEPYVGQEF 60 ETEAAAHAFY NAYATHVGFI IRVSKLSRSR RDGTAIGRAL VCNKEGYRMP DKREKIVRQR 120 AETRVGCRAM ILVRKVSSGK WVVTKFVKEH THPLTPGKGR RDCIYDQYPN EHDKIRELSQ 180 QLAVEKKRAA TYKRHLDLIF EHIEEHNESL SKKIQHIVDS VKEIEGKEQQ GYR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna21669.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004309808.1	1e-173	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
Refseq	XP_011457258.1	1e-173	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
Refseq	XP_011457259.1	1e-173	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
Refseq	XP_011457260.1	1e-173	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2
Refseq	XP_011457261.1	1e-174	PREDICTED: protein FAR1-RELATED SEQUENCE 1 isoform X3
TrEMBL	A0A2P6QUD0	1e-165	A0A2P6QUD0_ROSCH; Putative transcription factor FAR family
STRING	XP_004309808.1	1e-173	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-94	FAR1 family protein

Link Out ? help Back to Top
Phytozome	mrna21669.1-v1.0-hybrid