PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21755.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 354aa    MW: 40296.4 Da    PI: 4.9362
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21755.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.84.2e-23511861128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diy.kvePwdLpk......kvkaeekewyfFskrdkkyatgkrknrat 78 
                              lp+G+rF+Ptd+elv++yL+ +++  +   +++++e+ + y + ePw   +      + k+e+k +yfF++r++ ++t++r  r++
  mrna21755.1-v1.0-hybrid  51 LPVGLRFNPTDHELVDYYLQSRIALGDSFHSDFVSECpNFYgENEPWVVWQmygggeSKKEENKTLYFFTHRKRLSPTSTRFDRKV 136
                              799*******************998886666999**988773569**9964356664333345577******************** PP

                      NAM  79 ksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               sg+W+ +   ++v+++  ++ ++g+k+ + + +g + + ++  W+m+ey++
  mrna21755.1-v1.0-hybrid 137 GSGTWSGQY-PRDVFDEedGSVVIGIKREFRYEEGCDDR-HNKAWLMQEYQI 186
                              *****9875.5888887667778**********998887.6789******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-2443200IPR003441NAC domain
PROSITE profilePS5100528.38351201IPR003441NAC domain
PfamPF023651.2E-1652186IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MVTLRPRQGS NNKKQGSSVS ETTGTPRSRQ GSQNKKQDSK KRSSSTNESG LPVGLRFNPT  60
DHELVDYYLQ SRIALGDSFH SDFVSECPNF YGENEPWVVW QMYGGGESKK EENKTLYFFT  120
HRKRLSPTST RFDRKVGSGT WSGQYPRDVF DEEDGSVVIG IKREFRYEEG CDDRHNKAWL  180
MQEYQIVDDD SDIVLCALRK NHRTPQPAQS SSVVGKTRVD VKKRKTIVDK PKAKRHKKKE  240
IFDEEEDGSS VDDLSMEPQG TSVDIDQPKM EQINFELDQD HPMLQVVSPF GQLHDDQDCY  300
YPELLVDDNP DTSTIDDLLA QTPTRYDNNN FNLVSGGSVQ DESDKFLDLL LNS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21755.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459317.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
TrEMBLA0A2P6QEP24e-94A0A2P6QEP2_ROSCH; Putative transcription factor NAM family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1761026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.17e-17NAC-domain protein 101