PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22263.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 220aa    MW: 25470.4 Da    PI: 5.2774
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22263.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM86.26.1e-2771401128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknrat 78 
                              lppG++F+P  e+l+v+yL++k++g+++   e ++ +d+y k ePw++ +       ++++e++++yfF++ ++k+++gk+ +r++
  mrna22263.1-v1.0-hybrid   7 LPPGYKFRPDKEQLLVHYLRPKLDGEDFAQ-ELVPFCDLYgKKEPWQIWNdyfqelsATDKERTDLYFFTQLKTKTPKGKHIKRTV 91 
                              79*************************988.89*****99456*****644566554333355588******************** PP

                      NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               sg+Wk     kevl+++++++g ++ + +  +++ ++++ +W+mhe++l
  mrna22263.1-v1.0-hybrid  92 GSGTWKGEDAPKEVLAASQRVIGKRRRFRYG-NDKDSAQNDRWLMHEFEL 140
                              *****************************98.6777889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-306162IPR003441NAC domain
PROSITE profilePS5100531.6067162IPR003441NAC domain
PfamPF023656.7E-178140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MAVDDDLPPG YKFRPDKEQL LVHYLRPKLD GEDFAQELVP FCDLYGKKEP WQIWNDYFQE  60
LSATDKERTD LYFFTQLKTK TPKGKHIKRT VGSGTWKGED APKEVLAASQ RVIGKRRRFR  120
YGNDKDSAQN DRWLMHEFEL DASLLRNKRK AKDYVLCIVR KKSRSVKKNS EDQEGDETSC  180
DGGDDQQDGD LPEAKKNNDH KDSETVSLEE MENLLMSDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-21616816171NO APICAL MERISTEM PROTEIN
1ut4_B5e-21616816171NO APICAL MERISTEM PROTEIN
1ut7_A5e-21616816171NO APICAL MERISTEM PROTEIN
1ut7_B5e-21616816171NO APICAL MERISTEM PROTEIN
4dul_A5e-21616816171NAC domain-containing protein 19
4dul_B5e-21616816171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22263.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298024.21e-162PREDICTED: NAC domain-containing protein 19-like
TrEMBLA0A314XVL43e-49A0A314XVL4_PRUYE; Uncharacterized protein
STRINGXP_004298024.11e-161(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.12e-20NAC domain containing protein 19