PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22411.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YC
Protein Properties Length: 165aa    MW: 18551.2 Da    PI: 6.501
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22411.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC89.53.2e-28691382795
                    NF-YC  27 kkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi.fdflvdi 95 
                               +i+k+++ vkmis+e+P+l+skacelfi+eltlr+wl++e +k+rtl+k+dia+a+ + +  + fl  i
  mrna22411.1-v1.0-hybrid  69 ERIMKSNDVVKMISSETPILFSKACELFIMELTLRAWLQTEASKKRTLQKCDIAKAIRKDQLlHHFLAPI 138
                              69*******************************************************9876416677665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008089.9E-1469125IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471138.55E-1869137IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.7E-2270126IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MNPSNNSHPP PPTPQVFHNF MPTSSSLLPD STQEEAEAAR CTNLVQLEKN NVQLFCVKEL  60
PSTTSCSGER IMKSNDVVKM ISSETPILFS KACELFIMEL TLRAWLQTEA SKKRTLQKCD  120
IAKAIRKDQL LHHFLAPIVL CTLHYDHDDD DDSENATPRK KRVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B4e-20521391295NF-YC
4awl_C4e-2052139992NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B4e-2052139992NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22411.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024191896.12e-62nuclear transcription factor Y subunit C-1-like
TrEMBLA0A2P6QUM44e-42A0A2P6QUM4_ROSCH; Putative transcription factor Hap3/NF-YB family
STRINGXP_010108900.15e-37(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143991518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.17e-23nuclear factor Y, subunit C1