PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22614.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 262aa    MW: 27479.9 Da    PI: 8.8134
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22614.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.51.1e-086186227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                             kt+lC+ +     Ck+Gd+C+FaHg+
  mrna22614.1-v1.0-hybrid 61 KTRLCNKYNSAEGCKFGDKCHFAHGE 86
                             8***********************96 PP
2zf-CCCH37.54.1e-12228252126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              y+t+lC++fa+ GtC +G+rC+FaHg
  mrna22614.1-v1.0-hybrid 228 YRTKLCDNFAK-GTCTFGERCHFAHG 252
                              89*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.362123IPR000571Zinc finger, CCCH-type
SMARTSM00356100322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4620IPR000571Zinc finger, CCCH-type
PfamPF146081.1920No hitNo description
SuperFamilySSF902292.49E-85890IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-145991IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.925987IPR000571Zinc finger, CCCH-type
SMARTSM003560.00255986IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-66186IPR000571Zinc finger, CCCH-type
SMARTSM003226.9E-12132202IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.0E-16132203IPR004088K Homology domain, type 1
PROSITE profilePS5008414.403133197IPR004088K Homology domain, type 1
CDDcd001058.77E-15135202No hitNo description
PfamPF000135.5E-12135199IPR004088K Homology domain, type 1
SuperFamilySSF547911.31E-15135228IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.1E-16223259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.464227254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-8227257IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-8227253IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9228252IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MQLPRSTAGC PFGESCHFLH YVPGGYNAVA QVMNLAPPPQ SSRNFAGPPS HSNGSSAPTA  60
KTRLCNKYNS AEGCKFGDKC HFAHGERELG KPVSQSYGHD DPRAMAPAPG RMGNWMEPGH  120
APMQGPASSF GASSTAKISV DASLAGAIIG KGGVNSKHIC HQTGAKLAIR DHESDPNLRN  180
IELEGTFEQI QQASTLVREL IQSVLMSGPN KTPGRGASGA PAPPGSNYRT KLCDNFAKGT  240
CTFGERCHFA HGAAELRKPG M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22614.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468049.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
RefseqXP_011468050.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ69XQ35e-92C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A2P6RDK51e-173A0A2P6RDK5_ROSCH; Putative transcription factor C3H family
STRINGXP_004304369.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-64C3H family protein