PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22861.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 251aa    MW: 27707.9 Da    PI: 4.5806
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22861.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.63e-0551110245
                              HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...................TTS-STCHHHHH CS
                      HLH   2 rrahnerErrRRdriNsafeeLrellPkas................kapskKlsKaeiLe 45 
                              r+ +   Er  R+++N+ +++Lr ++ +++                ka + K +K++ Le
  mrna22861.1-v1.0-hybrid  51 RTHATRDEREVREQLNDVIQQLRHVICTPMvqvhrdalnplrcregKALKLKDDKISNLE 110
                              7778888*********************98899999999999999877777777776665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MLTTLPLGLR LSSSLNSIWI KFKKVKPRIE PDAYDVEDPS SFPDGSSQFT RTHATRDERE  60
VREQLNDVIQ QLRHVICTPM VQVHRDALNP LRCREGKALK LKDDKISNLE EQFPDPIRSV  120
QVCHEFGYAP ELPDGTRPDI SNLIPMTTIL NWCDHNHADR PQPPDLASVN EDHDSTGKVN  180
EDRAELGQRA EAAREGVAKE EGLGGVRGGV GPEVEEARGG GDGVGRAEGE EVEGEAEPAV  240
EVFTIFLLLF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22861.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-