PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23113.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 238aa    MW: 27303.1 Da    PI: 4.6761
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23113.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.4e-1757101147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg+ T++E+el+v+++k+lG++ W++Ia +++ gRt++++k++w+++
  mrna23113.1-v1.0-hybrid  57 RGNITEDEEELIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSF 101
                              7999******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.3551151IPR017877Myb-like domain
SuperFamilySSF466891.58E-211398IPR009057Homeodomain-like
SMARTSM007170.00151553IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-121858IPR009057Homeodomain-like
PROSITE profilePS5129425.63452106IPR017930Myb domain
SMARTSM007172.2E-1556104IPR001005SANT/Myb domain
PfamPF002494.6E-1557100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2459106IPR009057Homeodomain-like
CDDcd001674.31E-1161102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRSSTYYDK HQGLKKGVWD PKEDQIVKDY VKKHGLKRCG KSVRLRWLNY LRPDIVRGNI  60
TEDEEELIVR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNS FVKRKLQPEN PLEVPRNEKI  120
REDSPSSAAV AAAAEDSPHL TENNVNEEED DHNQYHDFDV GVGVAVESDA INDNGSGDDE  180
HLRDDLWWNN FMMDLNGTEC NVSEFQTDFT EIWESKENVI PVGDCSTDHH DIMPTNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24141065108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23113.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298561.11e-167PREDICTED: transcription factor MYB82-like
TrEMBLA0A2P6Q1H21e-104A0A2P6Q1H2_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004298561.11e-166(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3468822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.17e-46myb domain protein 3