PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23260.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 236aa    MW: 26889.4 Da    PI: 8.9134
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23260.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.32.9e-1965150190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                              k+Y++Y+k +GF+v+k++s+k+ ++g+ +  tf+Cs+ gk++++++    + + r++t+ +Ckakl+ +   dgkw+v++++l Hn
  mrna23260.1-v1.0-hybrid  65 KYYRSYGKGMGFEVCKRTSSKE-DDGKLKYITFTCSRFGKPNSKSRY---AFKFRPVTKSDCKAKLNANFLPDGKWVVSTIVLGHN 146
                              69****************9998.8899****************9988...9999******************************** PP

                     FAR1  87 Hela 90 
                              H+l+
  mrna23260.1-v1.0-hybrid 147 HDLS 150
                              **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1665150IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEGNIENEMD VGYEEEEDID YGNEVISASS NVEENIATIE SENVKEKIEE PKIGLVFDSI  60
DELEKYYRSY GKGMGFEVCK RTSSKEDDGK LKYITFTCSR FGKPNSKSRY AFKFRPVTKS  120
DCKAKLNANF LPDGKWVVST IVLGHNHDLS TPSKRRYYKT ERDLPSRVKK RLATNDIAGV  180
RPKTSFKSFV VEAGGHENLT FLEKDVRNYL DKIRRLRLGG GRCCCYSKVF PKNAR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154171RRYYKTERDLPSRVKKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23260.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024161868.11e-111protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A2N9J8F91e-66A0A2N9J8F9_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-19FAR1-related sequence 5