PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23552.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 329aa    MW: 37279.5 Da    PI: 4.4598
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23552.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.58.6e-2681373128
                      NAM   3 pGfrFhPtdeelvveyLkkk.vegkkleleevikevdiy.kvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                              +GfrF+Ptd elv +yL+++ v g++++ + v++  diy ++ePw +      ++ +e + +yfF++r+k +++ kr +r++ sg+
  mrna23552.1-v1.0-hybrid   8 VGFRFRPTDRELVAYYLHNRaVMGDQFQSSFVFNCPDIYgQTEPWIIWDlfggNLIEEGEALYFFTQRKKLNPKAKRFHRKVGSGT 93 
                              7****************9884677778885556666**9567**988533445444567788************************ PP

                      NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              W+a+ kd  v + +++++g+k+ + + kg++p  ++  W+m+ey+l
  mrna23552.1-v1.0-hybrid  94 WSAQSKDDVVSA-DHHVIGTKREFRYEKGSDPL-QNGVWLMQEYEL 137
                              *****9888877.999*************9999.89********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-273150IPR003441NAC domain
PROSITE profilePS5100525.4666151IPR003441NAC domain
PfamPF023659.5E-188137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAYPPLGVGF RFRPTDRELV AYYLHNRAVM GDQFQSSFVF NCPDIYGQTE PWIIWDLFGG  60
NLIEEGEALY FFTQRKKLNP KAKRFHRKVG SGTWSAQSKD DVVSADHHVI GTKREFRYEK  120
GSDPLQNGVW LMQEYELTSL NDMVLCTLRK SSRPPAETAS SSTAAPPLNQ SVDENFGNKM  180
KRKMNFCEEE EEEDSCKRKK LEPPKPSYLY EQHFDVDKLF DFDHQPKTPD HMVSVAQPFV  240
QVEKSNDDLI MPSLISDDES LEAVQVMASV GQSICAATIN SLMDSPISFE HFDAEVDEFL  300
GLTADDYNNN NNEDGISQFS SSDLSCLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-15115015164NO APICAL MERISTEM PROTEIN
1ut4_B4e-15115015164NO APICAL MERISTEM PROTEIN
1ut7_A4e-15115015164NO APICAL MERISTEM PROTEIN
1ut7_B4e-15115015164NO APICAL MERISTEM PROTEIN
3swm_A5e-15115018167NAC domain-containing protein 19
3swm_B5e-15115018167NAC domain-containing protein 19
3swm_C5e-15115018167NAC domain-containing protein 19
3swm_D5e-15115018167NAC domain-containing protein 19
3swp_A5e-15115018167NAC domain-containing protein 19
3swp_B5e-15115018167NAC domain-containing protein 19
3swp_C5e-15115018167NAC domain-containing protein 19
3swp_D5e-15115018167NAC domain-containing protein 19
4dul_A4e-15115015164NAC domain-containing protein 19
4dul_B4e-15115015164NAC domain-containing protein 19
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180199KRKMNFCEEEEEEDSCKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23552.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308530.10.0PREDICTED: NAC transcription factor 29-like
STRINGXP_004308530.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1761026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.12e-19NAC-domain protein 101