PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna23639.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 216aa MW: 25105.2 Da PI: 9.0771

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna23639.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34.3	7.9e-11	78	179	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkek.dg 74 fY +Y+ GFs+rk k ++ +++ +++t + +k+ ++++ k + ++r+r +r +C a+++vk ++ ++ mrna23639.1-v1.0-hybrid 78 FYLHYSVAKGFSIRKYKLAWNSLEDRLIHKTKKENKQKVLHRSDVKdsekscrgkkmvKLVSSRSRRLSRQKCLAQFTVKYDRkKE 163 9**************9999888888888888888776665555557788888888777778899***********99899 PP FAR1 75 kwevtkleleHnHela 90 ++ +++++eHnH+l+ mrna23639.1-v1.0-hybrid 164 GYYASSFRTEHNHPLT 179 9***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-8	78	179	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MEGIDLSTTQ TENSDGSDEA KTRDSFGNGS DDRMEVSESE DRSDDEQCTM FNGKPYKDIE 60 LDDLSNVVFK SVEEAEMFYL HYSVAKGFSI RKYKLAWNSL EDRLIHKTKK ENKQKVLHRS 120 DVKDSEKSCR GKKMVKLVSS RSRRLSRQKC LAQFTVKYDR KKEGYYASSF RTEHNHPLTR 180 LVHRQFMRTN RLVKEHDIAQ HRGLGNFLGV LCYNE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna23639.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004306895.1	1e-128	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_004306895.1	1e-128	(Fragaria vesca)

Link Out ? help Back to Top
Phytozome	mrna23639.1-v1.0-hybrid