PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23816.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 201aa    MW: 23134.7 Da    PI: 9.0857
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23816.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3375.9e-1284174280
                              EEE-..-HHHHT.T-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                       B3   2 fkvltpsdvlks.grlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                              +k+lt+sdv    +rl ++k+++++h            +g++ + ++++ +d+ g+++ + ++++ ++  +vlt+GWk F+++++L
  mrna23816.1-v1.0-hybrid  84 EKQLTRSDVKDDqARLAMSKEHVTNHlipllnenedlyQGIH-NAMKVITYDLAGKEYPMAFKIWASK-IHVLTGGWKTFCHEHDL 167
                              79*******98879***************9998888885553.7799***************999987.789*************9 PP

                              -.TT-EE CS
                       B3  75 k.egDfv 80 
                                  Dfv
  mrna23816.1-v1.0-hybrid 168 VeIQDFV 174
                              8577877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100173.81E-1483193No hitNo description
Gene3DG3DSA:2.40.330.101.5E-1583193IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.004783195IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-1583196IPR015300DNA-binding pseudobarrel domain
PfamPF023625.8E-984177IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MKHAVDHKKD TKILEDHNLK SDFQIGLSPD AKIKRQKALK IEEHKEATIG VQQRGLYRQN  60
YAPSNLPPIP RLHSLIQICS KPYEKQLTRS DVKDDQARLA MSKEHVTNHL IPLLNENEDL  120
YQGIHNAMKV ITYDLAGKEY PMAFKIWASK IHVLTGGWKT FCHEHDLVEI QDFVRVWMFR  180
NVATGNLCFV IDRVERNAGL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23816.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011463999.11e-150PREDICTED: putative B3 domain-containing protein At4g03170
TrEMBLA0A2P6RSD25e-71A0A2P6RSD2_ROSCH; Putative transcription factor B3-Domain family
STRINGEMJ059791e-60(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.13e-25B3 family protein