PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23882.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 452aa    MW: 49628.1 Da    PI: 4.6845
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23882.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS297.34e-91504402373
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal...ppsetseknsseelaal.kl 83 
                              ++lLl+cA a++s+d +laq++++ l++ as+ gdp+qRl++ +++AL +r +r ++++ +      ++++s+++s++++aa  +l
  mrna23882.1-v1.0-hybrid  50 EKLLLHCASALESNDVTLAQQVMWVLNNVASSVGDPNQRLTSWILRALISRSSRICPSVNSFNgggGSNPSSSNTSTSTTAAErRL 135
                              689************************************************99999999876533223333333333333333222 PP

                     GRAS  84 ........fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg...skee 157
                                      ++++ P+++f++ + N+aI +a++g++++Hi+Df+i++++QWp+L++aL +Rpegpp slR+T+ +    +    + +
  mrna23882.1-v1.0-hybrid 136 mtvtelagYVDLIPWHRFGYCASNSAIFQAIQGCSKIHILDFSITHCMQWPTLIDALGKRPEGPPeSLRVTVPSCRPLVpplLNVS 221
                              44456689*****************************************************99888*****98875555889999* PP

                     GRAS 158 leetgerLakfAeelgvpfefnvl.....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238
                              +ee+g rL +f +  +vpfefnv+      +  l++l++ +L+++ +Eal+Vn++  l +l d+++s++s+r+++L +++ l+P++
  mrna23882.1-v1.0-hybrid 222 IEEVGLRLGNFSRFRDVPFEFNVIensssFELLLSQLNPTSLNLDDDEALVVNCQNWLRYLSDDEGSSNSARNTFLTMIRCLNPRI 307
                              ***********************9644433334567799*********************************************** PP

                     GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                              +vvv++++d++s+s+  r++ +++y +  fdsle+ lp++s++r+ +E   +g++i+n++  eg +r+er e+  + ++r+++aGF
  mrna23882.1-v1.0-hybrid 308 IVVVDEDSDLSSPSLSSRITTCFNYLWIPFDSLETFLPKDSNQRMEYEFD-IGQKIENIIGFEGVQRIERLESGVTASQRMRNAGF 392
                              ************************************************99.*********************************** PP

                     GRAS 325 kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                               + p+ e+++ ++k+ll +++  g+ ++ e++ lvl+Wk+++ v+++aW
  mrna23882.1-v1.0-hybrid 393 LSSPFCEETVGEVKTLLDEHA-SGWGMKREEEMLVLTWKGHNSVFATAW 440
                              *********************.88999999******************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.7723422IPR005202Transcription factor GRAS
PfamPF035141.4E-8850440IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MKTEVRVGSS TSIAALQSPS LLINNTTSQG ASLTGALRGC LGSLDGACIE KLLLHCASAL  60
ESNDVTLAQQ VMWVLNNVAS SVGDPNQRLT SWILRALISR SSRICPSVNS FNGGGGSNPS  120
SSNTSTSTTA AERRLMTVTE LAGYVDLIPW HRFGYCASNS AIFQAIQGCS KIHILDFSIT  180
HCMQWPTLID ALGKRPEGPP ESLRVTVPSC RPLVPPLLNV SIEEVGLRLG NFSRFRDVPF  240
EFNVIENSSS FELLLSQLNP TSLNLDDDEA LVVNCQNWLR YLSDDEGSSN SARNTFLTMI  300
RCLNPRIIVV VDEDSDLSSP SLSSRITTCF NYLWIPFDSL ETFLPKDSNQ RMEYEFDIGQ  360
KIENIIGFEG VQRIERLESG VTASQRMRNA GFLSSPFCEE TVGEVKTLLD EHASGWGMKR  420
EEEMLVLTWK GHNSVFATAW VPNQTGLLLE D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B5e-574344227420Protein SHORT-ROOT
5b3h_E5e-574344227420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23882.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287911.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A2P6S2K50.0A0A2P6S2K5_ROSCH; Putative transcription factor GRAS family
STRINGXP_004287911.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-118GRAS family protein