PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23894.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GeBP
Protein Properties Length: 393aa    MW: 43300.1 Da    PI: 4.6572
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23894.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57396.13.5e-30150243297
                   DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 
                              ++ rlw e+Dei++L G+i+fkak+g++ps+++ af+ef+++s++++v+k+ql++K rrLKkK+    +   ++ e++fsk+h+ k
  mrna23894.1-v1.0-hybrid 150 KAGRLWGEDDEIAILEGMIEFKAKNGTDPSSNMGAFHEFLRRSLKADVNKNQLMDKARRLKKKYYLPNAA--DKGENVFSKAHELK 233
                              5679************************************************************988887..667789******** PP

                   DUF573  88 ifelskkiWg 97 
                                +ls+kiWg
  mrna23894.1-v1.0-hybrid 234 LVDLSNKIWG 243
                              *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.2E-27153243IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MAPKRLLEDP PAASSMEEDS DAETVDEEEE EVQNDVVEDE EEKSGDEEDD EDEEEDDDEE  60
NVTANKKPQS ESASDAGSET ESDAMTHSPT ASDFTVKPIV SKPMNDSPAK PTRKTAAPAK  120
RAAESDPNPK DSKKKKKGSN GSGEDEETKK AGRLWGEDDE IAILEGMIEF KAKNGTDPSS  180
NMGAFHEFLR RSLKADVNKN QLMDKARRLK KKYYLPNAAD KGENVFSKAH ELKLVDLSNK  240
IWGVEANGGG DGGKNSKKKP RKSAKAVAVD NSASPVLALP VSYVPAEKSA EKKVEKKAEM  300
NNVANGGMEA ESDDLFWSKY PFLRDSLRFG KWDGLELVLM HGMPSIGSSK AKELDDRWRK  360
LQVSEMELVA KKLALEHEMT KFILDSMKSR KE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23894.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011463030.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A2P6S2H81e-151A0A2P6S2H8_ROSCH; Putative transcription factor GeBP family
STRINGXP_004289148.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139661119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-21DNA-binding storekeeper protein-related transcriptional regulator