PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23926.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 760aa    MW: 82505.1 Da    PI: 5.4392
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23926.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.85.1e-151011401756
                              HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              ++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  mrna23926.1-v1.0-hybrid 101 RFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 140
                              78***********************************999 PP
2START2207.7e-692795011206
                              HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS
                    START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla 77 
                              ela +a++el+++a+ +ep+W+ s     + +n+de++++f+++ v     ++ ea+r+s+vv+m++ +lve+l+d++ qW++ + 
  mrna23926.1-v1.0-hybrid 279 ELAVQAMEELIRMAQIGEPLWMNSIdgstTVLNEDEYIRTFPRGIVpkqsgFKCEASRESAVVIMNHNNLVEILMDVN-QWSTVFS 363
                              57899********************999999*************99********************************.******* PP

                              ....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEE CS
                    START  78 ....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgi 152
                                  +a+tl+v+s+g      galq+m+ae+q++splvp R+++fvRy++q+ +g+w++vdvS+d+++  +  s +  ++++pSg+
  mrna23926.1-v1.0-hybrid 364 givsRAMTLDVLSTGvagnynGALQVMTAEFQVPSPLVPtRESYFVRYCKQHVDGTWAVVDVSLDNQRGYT--STLKSCQRRPSGC 447
                              ********************************************************************986..57777889***** PP

                              EEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                    START 153 liepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                              li++++ng+skvtw+ehv++++r +h+l+++lv+sg a+gak+wvatl+rqce+
  mrna23926.1-v1.0-hybrid 448 LIQEMPNGYSKVTWIEHVEVDERGVHNLYKQLVNSGNAFGAKRWVATLDRQCER 501
                              ****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003899.8E-1094146IPR001356Homeobox domain
PROSITE profilePS5007113.912100142IPR001356Homeobox domain
SuperFamilySSF466893.76E-13100147IPR009057Homeodomain-like
CDDcd000869.42E-14100143No hitNo description
Gene3DG3DSA:1.10.10.602.4E-15101149IPR009057Homeodomain-like
PfamPF000461.4E-12101140IPR001356Homeobox domain
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PROSITE profilePS5084843.397270504IPR002913START domain
SuperFamilySSF559613.57E-35272503No hitNo description
CDDcd088755.05E-127274500No hitNo description
SMARTSM002341.1E-64279501IPR002913START domain
PfamPF018525.0E-58280501IPR002913START domain
Gene3DG3DSA:3.30.530.201.0E-4375501IPR023393START-like domain
SuperFamilySSF559611.03E-25520750No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MPAGIMIPAR NMPSMMGSNG NLGGYGSSSG LTLGQPANMM EAGGHFGNPL EMIATQNTSE  60
SELNARLGDD FDSATKSGSE NLEGGGSGDD GQDPRPNKKK RFFKECPHPD DKQRKELSRE  120
LGLEPLQVKF WFQNKRTQMK TQHERHENTN LRNENEKLRA DNMRYREALS NASCPNCGGP  180
TAIGEMSFDE HHLRLENARL REEIDRISAI AAKYVGKPVG NYPHMSSPVP PHRSPLDLGV  240
GNMGTSPHGF LLNSDMYTSG DIMRSIGAPS EADKPMIIEL AVQAMEELIR MAQIGEPLWM  300
NSIDGSTTVL NEDEYIRTFP RGIVPKQSGF KCEASRESAV VIMNHNNLVE ILMDVNQWST  360
VFSGIVSRAM TLDVLSTGVA GNYNGALQVM TAEFQVPSPL VPTRESYFVR YCKQHVDGTW  420
AVVDVSLDNQ RGYTSTLKSC QRRPSGCLIQ EMPNGYSKVT WIEHVEVDER GVHNLYKQLV  480
NSGNAFGAKR WVATLDRQCE RLASALATNI PTGDVGVITT QEGRKSMLKL AERMVISFCA  540
GVSASTTHTW TTLSGTGADD VRVMTRKSVD DPGRPPGIVL SAATSFWLPV PPKKVFEFLR  600
DENSRNEWDI LSNGGVVQEM AHIANGRDTG NCVSLLRVNS ANSSQSNMLI LQESCTDSTA  660
SYVIYAPVDI VAMNVVLNGS DPDYVALLPS GFAILPDGTS GSNSGEAESG GSLLTVAFQI  720
LVDSVPTAKL SLGSVATVNN LIACTVERIK ASLSLDNEA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23926.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287935.10.0PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1
RefseqXP_011463196.10.0PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1
RefseqXP_011463203.10.0PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1
RefseqXP_011463206.10.0PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A2P6S2C70.0A0A2P6S2C7_ROSCH; Putative transcription factor & lipid binding Homobox-WOX family
STRINGXP_004287935.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2