PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna24044.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

ERF

Protein Properties

Length: 225aa MW: 24671.6 Da PI: 6.9156

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna24044.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	66.8	4e-21	88	139	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 s+y+GVr+++ +g+W+AeIrdp+ r r++lg+f taeeAa+a+++a+ +++ge mrna24044.1-v1.0-hybrid 88 SKYRGVRQRP-WGKWAAEIRDPR----RaVRVWLGTFQTAEEAARAYDKAAVEFRGE 139 89******.******82....48***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	4.53E-34	88	146	No hit	No description
Pfam	PF00847	8.8E-14	88	139	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.2E-23	88	146	IPR016177	DNA-binding domain
PROSITE profile	PS51032	25.304	89	146	IPR001471	AP2/ERF domain
SMART	SM00380	1.1E-37	89	152	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.6E-33	89	147	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.1E-12	90	101	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.1E-12	112	128	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MAKEQEHAIM VSALEQVIGG GIATRTSGTS QNHCQYATSA AEAGTNKKVV ILVSDGDTCQ 60 VCKIDGCLGC EFFPPSNKHG KGKRVKKSKY RGVRQRPWGK WAAEIRDPRR AVRVWLGTFQ 120 TAEEAARAYD KAAVEFRGEK AKLNFPRISS EAGTSTAALT KQSMETDDEV HNQVNPSNEK 180 SANQELGQGS DVKDDEIDRF IWKMLKDDDG DEDLSTMVNS NMLN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-23	80	146	5	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna24044.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU732470	5e-50	GU732470.1 Malus x domestica AP2 domain class transcription factor (AP2D46) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004289221.1	1e-168	PREDICTED: ethylene-responsive transcription factor ERF109-like
Swissprot	Q9SZ06	6e-32	EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBL	A0A3S8T943	1e-160	A0A3S8T943_FRAAN; Transcription factor ERF93
STRING	XP_004289221.1	1e-168	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2962	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34410.1	3e-25	redox responsive transcription factor 1

Link Out ? help Back to Top
Phytozome	mrna24044.1-v1.0-hybrid

Publications ? help Back to Top
Matsuo M,Oelmüller R REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling. Plant Signal Behav, 2015. 10(11): p. e1051279 [PMID:26479402] Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression. J Vis Exp, 2018. [PMID:26649488] Bahieldin A, et al. Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant. BMC Plant Biol., 2016. 16(1): p. 216 [PMID:27716054] Huang D,Lin W,Deng B,Ren Y,Miao Y Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis. Int J Mol Sci, 2018. [PMID:29112140] Kong X, et al. PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis. Cell Rep, 2018. 22(5): p. 1350-1363 [PMID:29386120]