PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna24047.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 200aa MW: 21764.1 Da PI: 8.0302

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna24047.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.1	2.4e-07	58	87	2	31
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkr 31 fYneYA+++GFsvrk++ k+k++ge+ ++ mrna24047.1-v1.0-hybrid 58 FYNEYARKMGFSVRKEQVVKNKKTGEVLSK 87 9************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-4	58	87	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MSGDSTLGQG SFHRPPSIMS AMALRDITNI GGESSLADTS CKPKFGMEFD SEEAAYIFYN 60 EYARKMGFSV RKEQVVKNKK TGEVLSKFID SYEEEDEFQL LGMRCSRSIM CMEMNGSKEF 120 LNDADVQENG SKTGRQASGG RKNSETTSRP AQSSEEVIAN ISTDNVADVQ ANGSKRRRQA 180 SGGRKSTKTT SQTSPSSKS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna24047.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011468393.1	1e-37	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_004304854.1	6e-49	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	2e-10	FAR1 family protein

Link Out ? help Back to Top
Phytozome	mrna24047.1-v1.0-hybrid