PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24159.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GeBP
Protein Properties Length: 298aa    MW: 32616.1 Da    PI: 9.1826
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24159.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57357.44.1e-18119201397
                   DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 
                              fqr+++e+De++lL++l       +k+++ ++dafye vk+++s++v+ksql eK++r+KkKfk++ k+   g   + ++ h+ + 
  mrna24159.1-v1.0-hybrid 119 FQRVFTEKDELLLLRALQ------EKDAWVEMDAFYELVKDRLSVRVTKSQLQEKLKRMKKKFKRMAKD---GF--KPKQGHELE- 192
                              9***************94......4578999**********************************9999...32..233333332. PP

                   DUF573  89 felskkiWg 97 
                               el kk+Wg
  mrna24159.1-v1.0-hybrid 193 AELMKKVWG 201
                              366666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-14119201IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MAKSKRARTP LAEEADGAEQ VIASQLKKKK PEPTKSESSK PPSPPSDYET GSETDSGSES  60
DGAGQVQAAN AKRDAAAKEP VLTRSKASAT PATAAEKTKE VAESENEAEK EEKPKVTPFQ  120
RVFTEKDELL LLRALQEKDA WVEMDAFYEL VKDRLSVRVT KSQLQEKLKR MKKKFKRMAK  180
DGFKPKQGHE LEAELMKKVW GGGAGHVKAG KAEGEVSGAS LDVLSGMVGG FEGFKELGFS  240
EAFLKKGMDL VDEAKREELK ARWFKLEVAA VELFSVKAEL LRDQAKSILE ALKQSDN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168176KRMKKKFKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24159.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289495.10.0PREDICTED: uncharacterized protein LOC101298660
STRINGXP_004289495.10.0(Fragaria vesca)